Mercurial > repos > marcoalbuquerque > bam_parallelism_test
changeset 5:44005870d0f3 draft
Uploaded
| author | marcoalbuquerque |
|---|---|
| date | Mon, 02 Mar 2015 20:06:12 -0500 |
| parents | 0ec6a49b43df |
| children | ef32d9b9ba95 |
| files | bam_parallelism_test.xml |
| diffstat | 1 files changed, 2 insertions(+), 2 deletions(-) [+] |
line wrap: on
line diff
--- a/bam_parallelism_test.xml Mon Mar 02 20:03:55 2015 -0500 +++ b/bam_parallelism_test.xml Mon Mar 02 20:06:12 2015 -0500 @@ -5,8 +5,8 @@ <parallelism method="multi" split_inputs="interval" split_mode="by_rname" real_split="False" merge_outputs="output"/> <command> - ln -s $normal input.bam - ln -s $normal.metadata.bam_index input.bam.bai + ln -s $normal input.bam; + ln -s $normal.metadata.bam_index input.bam.bai; samtools view input.bam \$(cat $interval) | head -n 5 > $output;