# HG changeset patch
# User marcoalbuquerque
# Date 1425344772 18000
# Node ID 44005870d0f3c42dad77089ad28d5c364adfc3ad
# Parent  0ec6a49b43df35c865fd2b980f6da7fb7e3bf217
Uploaded

diff -r 0ec6a49b43df -r 44005870d0f3 bam_parallelism_test.xml
--- a/bam_parallelism_test.xml	Mon Mar 02 20:03:55 2015 -0500
+++ b/bam_parallelism_test.xml	Mon Mar 02 20:06:12 2015 -0500
@@ -5,8 +5,8 @@
 	<parallelism method="multi" split_inputs="interval" split_mode="by_rname" real_split="False" merge_outputs="output"/>
 	<command>
 
-		ln -s $normal input.bam
-		ln -s $normal.metadata.bam_index input.bam.bai
+		ln -s $normal input.bam;
+		ln -s $normal.metadata.bam_index input.bam.bai;
 
 		samtools view input.bam \$(cat $interval) | head -n 5 > $output;