Mercurial > repos > marcoalbuquerque > bam_parallelism_test

annotate bam_parallelism_test.xml @ 1:213289565e12 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author marcoalbuquerque
date Sat, 28 Feb 2015 19:35:41 -0500
parents ab54013c8203
children 6ec7c93b90a6
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
ab54013c8203 Uploaded
marcoalbuquerque
parents:
diff changeset
1 <tool id="bam_parallelism_test" name="BAM Parallelism Test" version="2.4.1">
ab54013c8203 Uploaded
marcoalbuquerque
parents:
diff changeset
2 <description>
ab54013c8203 Uploaded
marcoalbuquerque
parents:
diff changeset
3 BAM Parallelism Test
ab54013c8203 Uploaded
marcoalbuquerque
parents:
diff changeset
4 </description>
ab54013c8203 Uploaded
marcoalbuquerque
parents:
diff changeset
5 <parallelism method="multi" split_inputs="normal,tumour" split_mode="by_rname" real_split="False" merge_outputs="output"/>
ab54013c8203 Uploaded
marcoalbuquerque
parents:
diff changeset
6 <command>
ab54013c8203 Uploaded
marcoalbuquerque
parents:
diff changeset
7
1
213289565e12 Uploaded
marcoalbuquerque
parents: 0
diff changeset
8 cat interval.txt;
0
ab54013c8203 Uploaded
marcoalbuquerque
parents:
diff changeset
9
ab54013c8203 Uploaded
marcoalbuquerque
parents:
diff changeset
10 </command>
ab54013c8203 Uploaded
marcoalbuquerque
parents:
diff changeset
11 <inputs>
ab54013c8203 Uploaded
marcoalbuquerque
parents:
diff changeset
12 <param type="data" format="bam" name="normal" label="Normal Alignment BAM"/>
ab54013c8203 Uploaded
marcoalbuquerque
parents:
diff changeset
13 <param type="data" format="bam" name="tumour" label="Tumour Alignment BAM"/>
ab54013c8203 Uploaded
marcoalbuquerque
parents:
diff changeset
14 </inputs>
ab54013c8203 Uploaded
marcoalbuquerque
parents:
diff changeset
15 <outputs>
ab54013c8203 Uploaded
marcoalbuquerque
parents:
diff changeset
16 <data format="bam" name="output"/>
ab54013c8203 Uploaded
marcoalbuquerque
parents:
diff changeset
17 </outputs>
ab54013c8203 Uploaded
marcoalbuquerque
parents:
diff changeset
18 </tool>