annotate variant_effect_predictor/Bio/Graphics/Glyph/extending_arrow.pm @ 3:d30fa12e4cc5 default tip

Merge heads 2:a5976b2dce6f and 1:09613ce8151e which were created as a result of a recently fixed bug.
author devteam <devteam@galaxyproject.org>
date Mon, 13 Jan 2014 10:38:30 -0500
parents 1f6dce3d34e0
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
1 package Bio::Graphics::Glyph::extending_arrow;
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
2
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
3 use strict;
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
4 use vars '@ISA';
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
5 use Bio::Graphics::Glyph::anchored_arrow;
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
6 @ISA = 'Bio::Graphics::Glyph::anchored_arrow';
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
7
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
8 =head1 NAME
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
9
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
10 Bio::Graphics::Glyph::extending_arrow -- The "extending arrow" glyph
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
11
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
12 =head1 SYNOPSIS
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
13
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
14 This is deprecated. Use L<Bio::Graphics::Glyph::anchored_arrow>
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
15 instead.
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
16
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
17 =head1 DESCRIPTION
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
18
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
19 This glyph was designed to show a segment that goes beyond the panel.
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
20 If the segment is contained within the panel, a vertical base is
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
21 shown. Otherwise, an arrow is shown.
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
22
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
23 Also see the arrow glyph.
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
24
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
25 =head2 OPTIONS
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
26
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
27 See L<Bio::Graphics::Glyph::anchored_arrow>. This glyph has been
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
28 deprecated.
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
29
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
30 =head1 BUGS
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
31
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
32 Please report them.
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
33
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
34 =head1 SEE ALSO
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
35
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
36 L<Bio::Graphics::Panel>,
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
37 L<Bio::Graphics::Glyph>,
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
38 L<Bio::Graphics::Glyph::arrow>,
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
39 L<Bio::Graphics::Glyph::cds>,
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
40 L<Bio::Graphics::Glyph::crossbox>,
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
41 L<Bio::Graphics::Glyph::diamond>,
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
42 L<Bio::Graphics::Glyph::dna>,
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
43 L<Bio::Graphics::Glyph::dot>,
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
44 L<Bio::Graphics::Glyph::ellipse>,
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
45 L<Bio::Graphics::Glyph::extending_arrow>,
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
46 L<Bio::Graphics::Glyph::generic>,
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
47 L<Bio::Graphics::Glyph::graded_segments>,
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
48 L<Bio::Graphics::Glyph::heterogeneous_segments>,
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
49 L<Bio::Graphics::Glyph::line>,
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
50 L<Bio::Graphics::Glyph::pinsertion>,
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
51 L<Bio::Graphics::Glyph::primers>,
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
52 L<Bio::Graphics::Glyph::rndrect>,
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
53 L<Bio::Graphics::Glyph::segments>,
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
54 L<Bio::Graphics::Glyph::ruler_arrow>,
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
55 L<Bio::Graphics::Glyph::toomany>,
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
56 L<Bio::Graphics::Glyph::transcript>,
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
57 L<Bio::Graphics::Glyph::transcript2>,
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
58 L<Bio::Graphics::Glyph::translation>,
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
59 L<Bio::Graphics::Glyph::triangle>,
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
60 L<Bio::DB::GFF>,
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
61 L<Bio::SeqI>,
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
62 L<Bio::SeqFeatureI>,
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
63 L<Bio::Das>,
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
64 L<GD>
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
65
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
66 =head1 AUTHOR
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
67
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
68 Originally by Shengqiang Shu. Temporarily deprecated by Lincoln
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
69 Stein.
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
70
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
71 Copyright (c) 2001 Berkeley Drosophila Genome Project
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
72
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
73 This library is free software; you can redistribute it and/or modify
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
74 it under the same terms as Perl itself. See DISCLAIMER.txt for
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
75 disclaimers of warranty.
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
76
1f6dce3d34e0 Uploaded
mahtabm
parents:
diff changeset
77 =cut