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1 # $Id: README,v 1.3 2002/03/15 12:46:43 heikki Exp $
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2
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3 README for Bio::LiveSeq::IO
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4
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5 LiveSeq objects representing known gene structures and their sequences
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6 have to be created from nucleotide sequence files. The current IO
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7 files do it by reading in EMBL entries and parsing out sequences as
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8 well as CDS, exon and primary_transcript features from the feature
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9 table.
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10
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11 Bio::LiveSeq::IO::Loader
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12
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13 is a superclass holding methods common to other methods.
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14
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15 Bio::LiveSeq::IO::BioPerl
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16
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17 is the preferred method which uses Bio::DB::EMBL to retrive
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18 sequences over the Web by accession number.
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19
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20 Bio::LiveSeq::IO::SRS
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21
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22 retrieves sequences from a local installation of SRS. It needs
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23 srsperl.pm which is part of SRS. SRS is short for Sequence
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24 Retrieval System, a comprehensive program suite for indexing
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25 and serving biological databases. SRS is a product of Lion
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26 BioSciences (http://www.lionbio.co.uk/). The license for
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27 academic users is free.
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