annotate variant_effect_predictor/Bio/Graphics/Glyph/box.pm @ 0:1f6dce3d34e0

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author mahtabm
date Thu, 11 Apr 2013 02:01:53 -0400
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1 package Bio::Graphics::Glyph::box;
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2 # DAS-compatible package to use for drawing a box
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3
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4 use strict;
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5 use vars '@ISA';
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6 use Bio::Graphics::Glyph::generic;
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7 @ISA = 'Bio::Graphics::Glyph::generic';
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8
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9 sub subseq {
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10 return ();
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11 }
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12
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13 1;
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14
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15 __END__
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16
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17 =head1 NAME
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18
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19 Bio::Graphics::Glyph::box - The "box" glyph
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20
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21 =head1 SYNOPSIS
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22
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23 See L<Bio::Graphics::Panel> and L<Bio::Graphics::Glyph>.
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24
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25 =head1 DESCRIPTION
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26
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27 This is the most basic glyph. It draws a filled box and optionally a
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28 label. It does *NOT* draw subparts, and so is useful for semantic
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29 zooming when one is zoomed out to far to see substructure.
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30
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31 =head2 OPTIONS
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32
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33 The following options are standard among all Glyphs. See
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34 L<Bio::Graphics::Glyph> for a full explanation.
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35
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36 Option Description Default
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37 ------ ----------- -------
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38
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39 -fgcolor Foreground color black
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40
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41 -outlinecolor Synonym for -fgcolor
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42
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43 -bgcolor Background color turquoise
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44
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45 -fillcolor Synonym for -bgcolor
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46
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47 -linewidth Line width 1
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48
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49 -height Height of glyph 10
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50
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51 -font Glyph font gdSmallFont
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52
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53 -connector Connector type 0 (false)
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54
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55 -connector_color
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56 Connector color black
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57
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58 -label Whether to draw a label 0 (false)
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59
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60 -description Whether to draw a description 0 (false)
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61
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62 -strand_arrow Whether to indicate 0 (false)
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63 strandedness
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64
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65
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66 =head1 BUGS
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67
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68 Please report them.
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69
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70 =head1 SEE ALSO
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71
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72 L<Bio::Graphics::Panel>,
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73 L<Bio::Graphics::Glyph>,
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74 L<Bio::Graphics::Glyph::arrow>,
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75 L<Bio::Graphics::Glyph::cds>,
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76 L<Bio::Graphics::Glyph::crossbox>,
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77 L<Bio::Graphics::Glyph::diamond>,
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78 L<Bio::Graphics::Glyph::dna>,
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79 L<Bio::Graphics::Glyph::dot>,
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80 L<Bio::Graphics::Glyph::ellipse>,
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81 L<Bio::Graphics::Glyph::extending_arrow>,
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82 L<Bio::Graphics::Glyph::generic>,
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83 L<Bio::Graphics::Glyph::graded_segments>,
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84 L<Bio::Graphics::Glyph::heterogeneous_segments>,
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85 L<Bio::Graphics::Glyph::line>,
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86 L<Bio::Graphics::Glyph::pinsertion>,
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87 L<Bio::Graphics::Glyph::primers>,
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88 L<Bio::Graphics::Glyph::rndrect>,
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89 L<Bio::Graphics::Glyph::segments>,
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90 L<Bio::Graphics::Glyph::ruler_arrow>,
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91 L<Bio::Graphics::Glyph::toomany>,
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92 L<Bio::Graphics::Glyph::transcript>,
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93 L<Bio::Graphics::Glyph::transcript2>,
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94 L<Bio::Graphics::Glyph::translation>,
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95 L<Bio::Graphics::Glyph::triangle>,
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96 L<Bio::DB::GFF>,
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97 L<Bio::SeqI>,
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98 L<Bio::SeqFeatureI>,
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99 L<Bio::Das>,
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100 L<GD>
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101
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102 =head1 AUTHOR
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103
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104 Allen Day E<lt>day@cshl.orgE<gt>.
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105
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106 Copyright (c) 2001 Cold Spring Harbor Laboratory
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107
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108 This library is free software; you can redistribute it and/or modify
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109 it under the same terms as Perl itself. See DISCLAIMER.txt for
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110 disclaimers of warranty.
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111
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112 =cut