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1 # $Id: Intron.pm,v 1.7 2001/06/18 08:27:53 heikki Exp $
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2 #
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3 # bioperl module for Bio::LiveSeq::Intron
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4 #
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5 # Cared for by Joseph Insana <insana@ebi.ac.uk> <jinsana@gmx.net>
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6 #
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7 # Copyright Joseph Insana
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8 #
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9 # You may distribute this module under the same terms as perl itself
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10 #
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11 # POD documentation - main docs before the code
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12
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13 =head1 NAME
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14
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15 Bio::LiveSeq::Intron - Range abstract class for LiveSeq
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16
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17 =head1 SYNOPSIS
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18
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19 # documentation needed
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20
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21 =head1 DESCRIPTION
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22
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23 Class for INTRON objects. They consist of a beginlabel, an endlabel (both
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24 referring to a LiveSeq DNA object) and a strand.
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25 The strand could be 1 (forward strand, default), -1 (reverse strand).
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26
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27 =head1 AUTHOR - Joseph A.L. Insana
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28
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29 Email: Insana@ebi.ac.uk, jinsana@gmx.net
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30
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31 Address:
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32
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33 EMBL Outstation, European Bioinformatics Institute
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34 Wellcome Trust Genome Campus, Hinxton
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35 Cambs. CB10 1SD, United Kingdom
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36
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37 =head1 APPENDIX
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38
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39 The rest of the documentation details each of the object
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40 methods. Internal methods are usually preceded with a _
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41
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42 =cut
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43
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44 # Let the code begin...
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45
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46 package Bio::LiveSeq::Intron;
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47 $VERSION=1.0;
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48
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49 # Version history:
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50 # Mon Mar 20 22:26:13 GMT 2000 v 1.0 begun
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51
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52 use strict;
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53 use vars qw($VERSION @ISA);
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54 use Bio::LiveSeq::Range 1.2; # uses Range, inherits from it
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55 @ISA=qw(Bio::LiveSeq::Range);
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56
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57 =head2 new
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58
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59 Title : new
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60 Usage : $intron1=Bio::LiveSeq::Intron->new(-seq => $objref,
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61 -start => $startlabel,
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62 -end => $endlabel,
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63 -strand => 1
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64 );
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65
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66 Function: generates a new Bio::LiveSeq::Intron
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67 Returns : reference to a new object of class Intron
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68 Errorcode -1
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69 Args : two labels and an integer
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70
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71 =cut
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72
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73 1;
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