Mercurial > repos > madisonflannery > abricate
changeset 2:2283a673298d draft
planemo upload commit 155b7c7efafb4731157848b7186363fb1d0b2be6-dirty
| author | madisonflannery |
|---|---|
| date | Wed, 22 Jun 2016 03:42:30 -0400 |
| parents | 6fbcc872f564 |
| children | 403a66ce0765 |
| files | abricate.xml |
| diffstat | 1 files changed, 5 insertions(+), 8 deletions(-) [+] |
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--- a/abricate.xml Wed Jun 22 03:15:28 2016 -0400 +++ b/abricate.xml Wed Jun 22 03:42:30 2016 -0400 @@ -28,28 +28,25 @@ <help><![CDATA[ Synopsis: - ABRicate 0.3 - mass screening of contigs for antiobiotic resistance genes Author: - Torsten Seemann <torsten.seemann@gmail.com> Usage: /usr/local/bin/abricate [options] <contigs.fasta> ... - --help This help. - --debug! Verbose debug output (default '0'). + --debug Verbose debug output (default '0'). - --version! Print version and exit. + --version Print version and exit. --datadir=s Downloaded ResFinder data (default '/usr/local/Cellar/abricate/0.3/bin/../db'). - --list! List included ABR databases (default '0'). + --list List included ABR databases (default '0'). - --noheader! Suppress column header row (default '0'). + --noheader Suppress column header row (default '0'). - --csv! Output CSV instead of TSV (default '0'). + --csv Output CSV instead of TSV (default '0'). --minid=f Minimum DNA identity (default '75').