Mercurial > repos > lparsons > sam_stats

view README.txt @ 2:f0f478955af3 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/sam_stats commit 394834f8f34909961cfbf6252fefbdc63342d78d-dirty
author lparsons
date Thu, 16 Jul 2015 17:28:31 -0400
parents 86442b91f80e
children
line wrap: on
line source

== ea-utils Galaxy Wrapper ==

This is a Galaxy wrapper for the sam-stats tools from the ea-utils suite.

** Installation **

Installation from a tool shed provides the necessary tool dependencies.

Otherwise, make sure fastq-join and sam-stats are in the path.
Move the test data files to your galaxy root test-data.
Move the xml files to a subdirectory of your tools directory and add lines in tool_conf.xml to point to them.
Restart the Galaxy server.

** Attribution **

The ea-utils package and associated documentation can be found at: http://code.google.com/p/ea-utils/

The galaxy wrapper code was written by Lance Parsons (lparsons@princeton.edu), Lewis-Sigler Institute for Integrative Genomics, Princeton University.