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planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/sam_stats commit 394834f8f34909961cfbf6252fefbdc63342d78d-dirty
author lparsons
date Thu, 16 Jul 2015 17:28:31 -0400
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86442b91f80e planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/sam_stats commit ff703cab6972f1486f9800786b63163ed8ab09f7
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1 == ea-utils Galaxy Wrapper ==
86442b91f80e planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/sam_stats commit ff703cab6972f1486f9800786b63163ed8ab09f7
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86442b91f80e planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/sam_stats commit ff703cab6972f1486f9800786b63163ed8ab09f7
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3 This is a Galaxy wrapper for the sam-stats tools from the ea-utils suite.
86442b91f80e planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/sam_stats commit ff703cab6972f1486f9800786b63163ed8ab09f7
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86442b91f80e planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/sam_stats commit ff703cab6972f1486f9800786b63163ed8ab09f7
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5 ** Installation **
86442b91f80e planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/sam_stats commit ff703cab6972f1486f9800786b63163ed8ab09f7
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86442b91f80e planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/sam_stats commit ff703cab6972f1486f9800786b63163ed8ab09f7
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7 Installation from a tool shed provides the necessary tool dependencies.
86442b91f80e planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/sam_stats commit ff703cab6972f1486f9800786b63163ed8ab09f7
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86442b91f80e planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/sam_stats commit ff703cab6972f1486f9800786b63163ed8ab09f7
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9 Otherwise, make sure fastq-join and sam-stats are in the path.
86442b91f80e planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/sam_stats commit ff703cab6972f1486f9800786b63163ed8ab09f7
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10 Move the test data files to your galaxy root test-data.
86442b91f80e planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/sam_stats commit ff703cab6972f1486f9800786b63163ed8ab09f7
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11 Move the xml files to a subdirectory of your tools directory and add lines in tool_conf.xml to point to them.
86442b91f80e planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/sam_stats commit ff703cab6972f1486f9800786b63163ed8ab09f7
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12 Restart the Galaxy server.
86442b91f80e planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/sam_stats commit ff703cab6972f1486f9800786b63163ed8ab09f7
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86442b91f80e planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/sam_stats commit ff703cab6972f1486f9800786b63163ed8ab09f7
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14 ** Attribution **
86442b91f80e planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/sam_stats commit ff703cab6972f1486f9800786b63163ed8ab09f7
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86442b91f80e planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/sam_stats commit ff703cab6972f1486f9800786b63163ed8ab09f7
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16 The ea-utils package and associated documentation can be found at: http://code.google.com/p/ea-utils/
86442b91f80e planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/sam_stats commit ff703cab6972f1486f9800786b63163ed8ab09f7
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86442b91f80e planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/sam_stats commit ff703cab6972f1486f9800786b63163ed8ab09f7
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18 The galaxy wrapper code was written by Lance Parsons (lparsons@princeton.edu), Lewis-Sigler Institute for Integrative Genomics, Princeton University.