Mercurial > repos > lparsons > rseqc_dev3
diff README.txt @ 5:31a43978eaa9 draft default tip
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| author | bgruening |
|---|---|
| date | Sat, 25 Apr 2015 10:07:21 -0400 |
| parents | 39a3a6b086b1 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/README.txt Sat Apr 25 10:07:21 2015 -0400 @@ -0,0 +1,24 @@ +== RSeQC Galaxy Wrapper == + +This is a Galaxy wrapper for the RSeQC RNA-Seq QC package. + +** Installation ** + +Installation from a tool shed provides the necessary tool dependencies, R, numpy, and RSeQC. + +Otherwise, make sure that R and the RSeQC scripts are in the path and run under the Galaxy environment. +Move the xml files to a subdirectory of your tools directory and add lines in tool_conf.xml to point to them. +Restart the Galaxy server. + +Requires Python 2.7 + +** Attribution ** + +The RSeQC package and associated documentation can be found at: http://rseqc.sourceforge.net/ + +The galaxy wrapper code was written by + Nilesh Kavthekar, School of Engineering and Applied Sciences, University of Pennsylvania, Class of 2016 +Modified by + Lance Parsons, Lewis-Sigler Institute for Integrative Genomics, Princeton University, + Bjorn Gruning, University of Freiburg, bjoern.gruening@gmail.com +The development of the wrapper code is housed on BitBucket at: https://bitbucket.org/lance_parsons/rseqc_galaxy_wrapper