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author bgruening
date Sat, 25 Apr 2015 10:07:21 -0400
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1 == RSeQC Galaxy Wrapper ==
2
3 This is a Galaxy wrapper for the RSeQC RNA-Seq QC package.
4
5 ** Installation **
6
7 Installation from a tool shed provides the necessary tool dependencies, R, numpy, and RSeQC.
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9 Otherwise, make sure that R and the RSeQC scripts are in the path and run under the Galaxy environment.
10 Move the xml files to a subdirectory of your tools directory and add lines in tool_conf.xml to point to them.
11 Restart the Galaxy server.
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13 Requires Python 2.7
14
15 ** Attribution **
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17 The RSeQC package and associated documentation can be found at: http://rseqc.sourceforge.net/
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19 The galaxy wrapper code was written by
20 Nilesh Kavthekar, School of Engineering and Applied Sciences, University of Pennsylvania, Class of 2016
21 Modified by
22 Lance Parsons, Lewis-Sigler Institute for Integrative Genomics, Princeton University,
23 Bjorn Gruning, University of Freiburg, bjoern.gruening@gmail.com
24 The development of the wrapper code is housed on BitBucket at: https://bitbucket.org/lance_parsons/rseqc_galaxy_wrapper