Mercurial > repos > lparsons > rseqc

annotate test-data/output.GC_plot.r @ 1:cd2daa987b69 draft default tip

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planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/rseqc commit 2400cce6e3918648fda8f2a8d8485ab251a58827
author lparsons
date Tue, 07 Jul 2015 14:14:04 -0400
parents 306127635959
children
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306127635959 planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/rseqc commit aeb25d807817746dd6957f30ce2070662cc10e91
lparsons
parents:
diff changeset
1 pdf("output.GC_plot.pdf")
306127635959 planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/rseqc commit aeb25d807817746dd6957f30ce2070662cc10e91
lparsons
parents:
diff changeset
2 gc=rep(c(60.78,41.18,47.06,56.86,29.41,27.45,37.25,78.43,58.82,50.98,49.02,62.75,68.63,54.90,52.94,35.29,43.14,39.22),times=c(3,3,5,7,1,2,2,1,1,3,2,1,1,1,3,1,2,1))
306127635959 planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/rseqc commit aeb25d807817746dd6957f30ce2070662cc10e91
lparsons
parents:
diff changeset
3 hist(gc,probability=T,breaks=100,xlab="GC content (%)",ylab="Density of Reads",border="blue",main="")
306127635959 planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/rseqc commit aeb25d807817746dd6957f30ce2070662cc10e91
lparsons
parents:
diff changeset
4 dev.off()