Mercurial > repos > lparsons > package_ea_utils_1_1_2_806

changeset 6:45ff6e4f329a draft

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planemo upload for repository https://github.com/lparsons/galaxy-tools/tree/master/packages/package_ea_utils_1_1_2_806 commit 394834f8f34909961cfbf6252fefbdc63342d78d-dirty
author lparsons
date Thu, 16 Jul 2015 16:00:28 -0400
parents a30c3223c327
children adcf6b32ffb0
files tool_dependencies.xml
diffstat 1 files changed, 30 insertions(+), 32 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Thu Jul 16 13:48:22 2015 -0400
+++ b/tool_dependencies.xml	Thu Jul 16 16:00:28 2015 -0400
@@ -1,32 +1,30 @@
-<?xml version="1.0"?>
-<tool_dependency>
-    <package name="gsl" version="1.16">
-        <repository changeset_revision="48e3daecb97f" name="package_gsl_1_16" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-    </package>
-
-    <package name="ea-utils" version="1.1.2-806">
-        <install version="1.0">
-            <actions>
-                <action target_filename="ea-utils.1.1.2-806.tar.gz" type="download_by_url">https://drive.google.com/uc?export=download&amp;id=0B7KhouP0YeRAc2xackxzRnFrUEU</action>
-                <action type="set_environment_for_install">
-                    <repository changeset_revision="48e3daecb97f" name="package_gsl_1_16" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
-                        <package name="gsl" version="1.1.16" />
-                    </repository>
-                </action>
-                <!-- Unable to get varcall to compile properly (even with gsl dependency), we don't need it, so skip -->
-                <action type="shell_command">sed -i.bak 's/\$(BINDIR)\/varcall//' Makefile</action>
-                <action type="shell_command">PREFIX=$INSTALL_DIR make install</action>
-                <!-- For some reason, this is not installed by the Makefile, so move it ourselves -->
-                <!-- <action type="move_file">
-                    <source>sam-stats</source>
-                    <destination>$INSTALL_DIR/bin</destination>
-                </action> -->
-                <action type="set_environment">
-                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
-                </action>
-            </actions>
-        </install>
-        <readme>
-        </readme>
-    </package>
-</tool_dependency>
+<?xml version="1.0"?>
+<tool_dependency>
+    <!--
+    <package name="gsl" version="1.16">
+        <repository name="package_gsl_1_16" owner="iuc" prior_installation_required="True"/>
+    </package>
+    -->
+    <package name="ea-utils" version="1.1.2-806">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url" target_filename="ea-utils.1.1.2-806.tar.gz">https://drive.google.com/uc?export=download&amp;id=0B7KhouP0YeRAc2xackxzRnFrUEU</action>
+                <!--
+                <action type="set_environment_for_install">
+                    <repository name="package_gsl_1_16" owner="iuc">
+                        <package name="gsl" version="1.1.16" />
+                    </repository>
+                </action>
+                -->
+                <!-- Unable to get varcall to compile properly (even with gsl dependency), we don't need it, so skip -->
+                <action type="shell_command">sed -i.bak 's/\$(BINDIR)\/varcall//' Makefile</action>
+                <action type="shell_command">PREFIX=$INSTALL_DIR make install</action>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+        </readme>
+    </package>
+</tool_dependency>