Mercurial > repos > lparsons > htseq_count

annotate README.rst @ 23:b638ba24d9fb draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/htseq_count commit 03f64004f90ac0a7be67ecfc355a7b361f3c3314
author iuc
date Tue, 20 Sep 2016 17:56:25 -0400
parents 737cda668bdd
children d8c5761a8ba7
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
18
737cda668bdd planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/htseq_count commit 7ed7ce73afea50d212c9470fd3b98a232e312502
lparsons
parents:
diff changeset
1 htseq-count wrapper for Galaxy
737cda668bdd planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/htseq_count commit 7ed7ce73afea50d212c9470fd3b98a232e312502
lparsons
parents:
diff changeset
2 ==============================
737cda668bdd planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/htseq_count commit 7ed7ce73afea50d212c9470fd3b98a232e312502
lparsons
parents:
diff changeset
3
737cda668bdd planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/htseq_count commit 7ed7ce73afea50d212c9470fd3b98a232e312502
lparsons
parents:
diff changeset
4 Galaxy wrapper for
737cda668bdd planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/htseq_count commit 7ed7ce73afea50d212c9470fd3b98a232e312502
lparsons
parents:
diff changeset
5 `htseq-count <http://www-huber.embl.de/users/anders/HTSeq/doc/count.html>`_
737cda668bdd planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/htseq_count commit 7ed7ce73afea50d212c9470fd3b98a232e312502
lparsons
parents:
diff changeset
6 script from python
737cda668bdd planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/htseq_count commit 7ed7ce73afea50d212c9470fd3b98a232e312502
lparsons
parents:
diff changeset
7 `HTSeq <http://www-huber.embl.de/users/anders/HTSeq/doc/index.html>`_ package.
737cda668bdd planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/htseq_count commit 7ed7ce73afea50d212c9470fd3b98a232e312502
lparsons
parents:
diff changeset
8
737cda668bdd planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/htseq_count commit 7ed7ce73afea50d212c9470fd3b98a232e312502
lparsons
parents:
diff changeset
9 Installation
737cda668bdd planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/htseq_count commit 7ed7ce73afea50d212c9470fd3b98a232e312502
lparsons
parents:
diff changeset
10 ------------
737cda668bdd planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/htseq_count commit 7ed7ce73afea50d212c9470fd3b98a232e312502
lparsons
parents:
diff changeset
11
737cda668bdd planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/htseq_count commit 7ed7ce73afea50d212c9470fd3b98a232e312502
lparsons
parents:
diff changeset
12 Installation directly from the `Galaxy Toolshed <http://toolshed.g2.bx.psu.edu/view/lparsons/htseq_count>`_ is
737cda668bdd planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/htseq_count commit 7ed7ce73afea50d212c9470fd3b98a232e312502
lparsons
parents:
diff changeset
13 recommended.
737cda668bdd planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/htseq_count commit 7ed7ce73afea50d212c9470fd3b98a232e312502
lparsons
parents:
diff changeset
14
23
b638ba24d9fb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/htseq_count commit 03f64004f90ac0a7be67ecfc355a7b361f3c3314
iuc
parents: 18
diff changeset
15 Galaxy Wrapper License
b638ba24d9fb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/htseq_count commit 03f64004f90ac0a7be67ecfc355a7b361f3c3314
iuc
parents: 18
diff changeset
16 ----------------------
18
737cda668bdd planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/htseq_count commit 7ed7ce73afea50d212c9470fd3b98a232e312502
lparsons
parents:
diff changeset
17
737cda668bdd planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/htseq_count commit 7ed7ce73afea50d212c9470fd3b98a232e312502
lparsons
parents:
diff changeset
18 Copyright (c) 2012-2014, Lance R. Parsons <lparsons@princeton.edu>
737cda668bdd planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/htseq_count commit 7ed7ce73afea50d212c9470fd3b98a232e312502
lparsons
parents:
diff changeset
19 All rights reserved.
737cda668bdd planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/htseq_count commit 7ed7ce73afea50d212c9470fd3b98a232e312502
lparsons
parents:
diff changeset
20
737cda668bdd planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/htseq_count commit 7ed7ce73afea50d212c9470fd3b98a232e312502
lparsons
parents:
diff changeset
21 Licensed under the BSD 2-Clause License: <http://opensource.org/licenses/BSD-2-Clause>
737cda668bdd planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/htseq_count commit 7ed7ce73afea50d212c9470fd3b98a232e312502
lparsons
parents:
diff changeset
22
737cda668bdd planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/htseq_count commit 7ed7ce73afea50d212c9470fd3b98a232e312502
lparsons
parents:
diff changeset
23 Redistribution and use in source and binary forms, with or without
737cda668bdd planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/htseq_count commit 7ed7ce73afea50d212c9470fd3b98a232e312502
lparsons
parents:
diff changeset
24 modification, are permitted provided that the following conditions are met:
737cda668bdd planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/htseq_count commit 7ed7ce73afea50d212c9470fd3b98a232e312502
lparsons
parents:
diff changeset
25
737cda668bdd planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/htseq_count commit 7ed7ce73afea50d212c9470fd3b98a232e312502
lparsons
parents:
diff changeset
26 * Redistributions of source code must retain the above copyright notice,
737cda668bdd planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/htseq_count commit 7ed7ce73afea50d212c9470fd3b98a232e312502
lparsons
parents:
diff changeset
27 this list of conditions and the following disclaimer.
737cda668bdd planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/htseq_count commit 7ed7ce73afea50d212c9470fd3b98a232e312502
lparsons
parents:
diff changeset
28
737cda668bdd planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/htseq_count commit 7ed7ce73afea50d212c9470fd3b98a232e312502
lparsons
parents:
diff changeset
29 * Redistributions in binary form must reproduce the above copyright notice,
737cda668bdd planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/htseq_count commit 7ed7ce73afea50d212c9470fd3b98a232e312502
lparsons
parents:
diff changeset
30 this list of conditions and the following disclaimer in the documentation
737cda668bdd planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/htseq_count commit 7ed7ce73afea50d212c9470fd3b98a232e312502
lparsons
parents:
diff changeset
31 and/or other materials provided with the distribution.
737cda668bdd planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/htseq_count commit 7ed7ce73afea50d212c9470fd3b98a232e312502
lparsons
parents:
diff changeset
32
737cda668bdd planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/htseq_count commit 7ed7ce73afea50d212c9470fd3b98a232e312502
lparsons
parents:
diff changeset
33 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
737cda668bdd planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/htseq_count commit 7ed7ce73afea50d212c9470fd3b98a232e312502
lparsons
parents:
diff changeset
34 ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
737cda668bdd planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/htseq_count commit 7ed7ce73afea50d212c9470fd3b98a232e312502
lparsons
parents:
diff changeset
35 WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
737cda668bdd planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/htseq_count commit 7ed7ce73afea50d212c9470fd3b98a232e312502
lparsons
parents:
diff changeset
36 DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
737cda668bdd planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/htseq_count commit 7ed7ce73afea50d212c9470fd3b98a232e312502
lparsons
parents:
diff changeset
37 FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
737cda668bdd planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/htseq_count commit 7ed7ce73afea50d212c9470fd3b98a232e312502
lparsons
parents:
diff changeset
38 DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
737cda668bdd planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/htseq_count commit 7ed7ce73afea50d212c9470fd3b98a232e312502
lparsons
parents:
diff changeset
39 SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
737cda668bdd planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/htseq_count commit 7ed7ce73afea50d212c9470fd3b98a232e312502
lparsons
parents:
diff changeset
40 CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
737cda668bdd planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/htseq_count commit 7ed7ce73afea50d212c9470fd3b98a232e312502
lparsons
parents:
diff changeset
41 OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
737cda668bdd planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/htseq_count commit 7ed7ce73afea50d212c9470fd3b98a232e312502
lparsons
parents:
diff changeset
42 OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.