Mercurial > repos > lparsons > fastx_barcode_splitter_enhanced
comparison fastx_barcode_splitter_galaxy_wrapper.sh @ 6:51e098891465 draft
planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/fastx_barcode_splitter_enhanced commit e6a486662201362134119c0ddc7151b8dd181ebd
| author | lparsons |
|---|---|
| date | Tue, 27 Oct 2015 11:46:21 -0400 |
| parents | 80e84db1c392 |
| children | 06ebd94d80ae |
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| 5:80e84db1c392 | 6:51e098891465 |
|---|---|
| 80 # | 80 # |
| 81 # Convert the textual tab-separated table into simple HTML table, | 81 # Convert the textual tab-separated table into simple HTML table, |
| 82 # with the local path replaces with a valid URL | 82 # with the local path replaces with a valid URL |
| 83 #HTMLSUMMARY=${PREFIX}stats_visible_html | 83 #HTMLSUMMARY=${PREFIX}stats_visible_html |
| 84 echo "<html><body><table border=1>" | 84 echo "<html><body><table border=1>" |
| 85 echo "$RESULTS" | sed "s|$BASEPATH\\(.*\\)|<a href=\"\\1\">\\1<\\a>|" | \ | 85 echo "$RESULTS" | sed "s|$BASEPATH\\(.*\\)|<a href=\"\\1\">\\1</a>|" | \ |
| 86 perl -n -i -e '$_ =~ s|\t|</td><td>|g; print "<tr><td>\n$_</td></tr>\n"' | 86 perl -n -e '$_ =~ s|\t|</td><td>|g; print "<tr><td>\n$_</td></tr>\n"' |
| 87 echo "<p>" | 87 echo "<p>" |
| 88 echo "</table></body></html>" | 88 echo "</table></body></html>" |