Mercurial > repos > lionelguy > spades
changeset 17:2aac62ba7af6 draft
Uploaded
| author | takadonet |
|---|---|
| date | Fri, 10 Oct 2014 12:45:00 -0400 |
| parents | 67beaf69fbdc |
| children | 6af23d04a3a3 |
| files | tools/spades_3_1_1/spades.pl |
| diffstat | 1 files changed, 1 insertions(+), 1 deletions(-) [+] |
line wrap: on
line diff
--- a/tools/spades_3_1_1/spades.pl Fri Oct 10 11:46:50 2014 -0400 +++ b/tools/spades_3_1_1/spades.pl Fri Oct 10 12:45:00 2014 -0400 @@ -131,7 +131,7 @@ while (<FASTA>){ next unless /^>/; chomp; - die "Not all elements found in $_\n" if (! m/^>(NODE|\w+)_(\d+)(?:_|\s)length_(\d+)_cov_(\d+\.*\d*)/); + die "Not all elements found in $_\n" if (! m/^>(NODE|\S+)_(\d+)(?:_|\s)length_(\d+)_cov_(\d+\.*\d*)/); my ($name,$n, $l, $cov) = ($1,$2, $3, $4); print TAB "$name" . "_$n\t$l\t$cov\n"; }