Mercurial > repos > lecorguille > xcms_xcmsset

comparison abims_xcms_xcmsSet.xml @ 23:329cfa3d2be6 draft

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planemo upload for repository https://github.com/workflow4metabolomics/xcms commit b274c5c21db1a6ad63c28d425a7a6bce483a4af4
author lecorguille
date Fri, 10 Feb 2017 11:01:21 -0500
parents d7971ea3ad1d
children d8915395681f
comparison
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22:25938ab94950 23:329cfa3d2be6
10 10
11 <command><![CDATA[ 11 <command><![CDATA[
12 @COMMAND_XCMS_SCRIPT@ 12 @COMMAND_XCMS_SCRIPT@
13 13
14 #if $inputs.input == "zip_file": 14 #if $inputs.input == "zip_file":
15 zipfile $inputs.zip_file 15 zipfile '$inputs.zip_file'
16 #elif $inputs.input == "single_file": 16 #elif $inputs.input == "single_file":
17 singlefile_galaxyPath $inputs.single_file singlefile_sampleName $inputs.single_file.name 17 singlefile_galaxyPath '$inputs.single_file' singlefile_sampleName '$inputs.single_file.name'
18 #end if 18 #end if
19 19
20 xfunction xcmsSet 20 xfunction xcmsSet
21 21
22 xsetRdataOutput $xsetRData 22 xsetRdataOutput '$xsetRData'
23 sampleMetadataOutput $sampleMetadata 23 sampleMetadataOutput '$sampleMetadata'
24 ticspdf $ticsRawPdf 24 ticspdf '$ticsRawPdf'
25 bicspdf $bpcsRawPdf 25 bicspdf '$bpcsRawPdf'
26 26
27 27
28 #if $options_scanrange.option == "show": 28 #if $options_scanrange.option == "show":
29 scanrange "c($options_scanrange.scanrange)" 29 scanrange "c($options_scanrange.scanrange)"
30 #end if 30 #end if