Mercurial > repos > lecorguille > xcms_xcmsset

diff abims_xcms_xcmsSet.xml @ 23:329cfa3d2be6 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/workflow4metabolomics/xcms commit b274c5c21db1a6ad63c28d425a7a6bce483a4af4
author lecorguille
date Fri, 10 Feb 2017 11:01:21 -0500
parents d7971ea3ad1d
children d8915395681f
line wrap: on
line diff
--- a/abims_xcms_xcmsSet.xml	Thu Feb 09 04:49:34 2017 -0500
+++ b/abims_xcms_xcmsSet.xml	Fri Feb 10 11:01:21 2017 -0500
@@ -12,17 +12,17 @@
         @COMMAND_XCMS_SCRIPT@
 
         #if $inputs.input == "zip_file":
-            zipfile $inputs.zip_file
+            zipfile '$inputs.zip_file'
         #elif $inputs.input == "single_file":
-            singlefile_galaxyPath $inputs.single_file singlefile_sampleName $inputs.single_file.name
+            singlefile_galaxyPath '$inputs.single_file' singlefile_sampleName '$inputs.single_file.name'
         #end if
 
         xfunction xcmsSet
 
-        xsetRdataOutput $xsetRData
-        sampleMetadataOutput $sampleMetadata
-        ticspdf $ticsRawPdf
-        bicspdf $bpcsRawPdf
+        xsetRdataOutput '$xsetRData'
+        sampleMetadataOutput '$sampleMetadata'
+        ticspdf '$ticsRawPdf'
+        bicspdf '$bpcsRawPdf'
 
 
         #if $options_scanrange.option == "show":