annotate test-data/.svn/text-base/xset.log.txt.svn-base @ 0:78e975e37cf4 draft default tip

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author lecorguille
date Fri, 07 Aug 2015 05:50:48 -0400
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1 PACKAGE INFO
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2 parallel 3.1.1
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3 BiocGenerics 0.12.1
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4 Biobase 2.26.0
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5 Rcpp 0.11.5
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6 mzR 2.0.0
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7 igraph 0.7.1
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8 xcms 1.42.0
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9 snow 0.3.13
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10 batch 1.1.4
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12
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13 ARGUMENTS INFO
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14 zipfile /w/galaxy/galaxy4metabolomics/galaxy-dist/database/files/041/dataset_41794.dat
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15 xfunction xcmsSet
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16 nSlaves 8
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17 method matchedFilter
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18 step 0.01
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19 fwhm 4
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20 max 50
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21 snthresh 1
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22 steps 2
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23
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24
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25 INFILE PROCESSING INFO
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26
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27
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28 MAIN PROCESSING INFO
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29 Starting snow cluster with 8 local sockets.
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30 Detecting features in file # 1 : HU_neg_028.mzXML
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31 Detecting features in file # 2 : HU_neg_060.mzXML
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32 Detecting features in file # 3 : HU_neg_051.mzXML
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33 Detecting features in file # 4 : HU_neg_017.mzXML
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34 Detecting features in file # 5 : HU_neg_034.mzXML
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35 Detecting features in file # 6 : Blanc09.mzXML
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36 Detecting features in file # 7 : Blanc06.mzXML
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37 Detecting features in file # 8 : Blanc12.mzXML
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38 Detecting features in file # 9 : Blanc04.mzXML
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39
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40
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41 XSET OBJECT INFO
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42 An "xcmsSet" object with 9 samples
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43
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44 Time range: 0.7-1140 seconds (0-19 minutes)
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45 Mass range: 50.0019-999.9863 m/z
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46 Peaks: 135846 (about 15094 per sample)
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47 Peak Groups: 0
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48 Sample classes: bio, blank
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49
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50 Profile settings: method = bin
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51 step = 0.01
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52
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53 Memory usage: 13.8 MB
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54
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55
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56 DONE