Mercurial > repos > lecorguille > xcms_summary
diff abims_xcms_summary.xml @ 28:8ad83969888b draft
planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 73791d74546087b2a872d9279df960f5bc207298
| author | lecorguille |
|---|---|
| date | Tue, 13 Feb 2018 04:45:13 -0500 |
| parents | 33694028a409 |
| children | 3d4339594010 |
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--- a/abims_xcms_summary.xml Tue Oct 24 11:48:55 2017 -0400 +++ b/abims_xcms_summary.xml Tue Feb 13 04:45:13 2018 -0500 @@ -1,4 +1,4 @@ -<tool id="abims_xcms_summary" name="xcms.summary" version="1.0.3"> +<tool id="abims_xcms_summary" name="xcms.summary" version="1.0.4"> <description>Create a summary of XCMS analysis</description> @@ -7,7 +7,7 @@ </macros> <requirements> - <requirement type="package" version="1.26.0">bioconductor-camera</requirement> + <requirement type="package" version="1.32.0">bioconductor-camera</requirement> <requirement type="package" version="1.1_4">r-batch</requirement> </requirements> @@ -51,30 +51,31 @@ Xcms.summary ============ +----------- Description ----------- This tool provide a HTML summary which summarizes your analysis using the [W4M] XCMS and CAMERA tools - +----------------- Workflow position ----------------- **Upstream tools** -+------------------------+------------------+----------------------+------------+ -| Name | output file | format | parameter | -+========================+==================+======================+============+ -| xcms.xcmsSet | xset.RData | rdata.xcms.raw | RData file | -+------------------------+------------------+----------------------+------------+ -| xcms.group | xset.RData | rdata.xcms.group | RData file | -+------------------------+------------------+----------------------+------------+ -| xcms.retcor | xset.RData | rdata.xcms.retcor | RData file | -+------------------------+------------------+----------------------+------------+ -| xcms.fillpeaks | xset.RData | rdata.xcms.fillpeaks | RData file | -+------------------------+------------------+----------------------+------------+ -| CAMERA.annotate | xset.RData | rdata.camera.* | RData file | -+------------------------+------------------+----------------------+------------+ +========================= ================= ===================== ========== +Name output file format parameter +========================= ================= ===================== ========== +xcms.xcmsSet xset.RData rdata.xcms.raw RData file +------------------------- ----------------- --------------------- ---------- +xcms.group xset.RData rdata.xcms.group RData file +------------------------- ----------------- --------------------- ---------- +xcms.retcor xset.RData rdata.xcms.retcor RData file +------------------------- ----------------- --------------------- ---------- +xcms.fillpeaks xset.RData rdata.xcms.fillpeaks RData file +------------------------- ----------------- --------------------- ---------- +CAMERA.annotate xset.RData rdata.camera.* RData file +========================= ================= ===================== ========== .. image:: xcms_summary_workflow.png @@ -84,6 +85,10 @@ Changelog/News -------------- +**Version 1.0.4 - 13/02/2018** + +- UPGRADE: upgrate the CAMERA version from 1.26.0 to 1.32.0 + **Version 1.0.3 - 03/02/2017** - IMPROVEMENT: xcms.summary can deal with merged individual data