comparison abims_xcms_summary.xml @ 28:8ad83969888b draft

planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 73791d74546087b2a872d9279df960f5bc207298
author lecorguille
date Tue, 13 Feb 2018 04:45:13 -0500
parents 33694028a409
children 3d4339594010
comparison
equal deleted inserted replaced
27:33694028a409 28:8ad83969888b
1 <tool id="abims_xcms_summary" name="xcms.summary" version="1.0.3"> 1 <tool id="abims_xcms_summary" name="xcms.summary" version="1.0.4">
2 2
3 <description>Create a summary of XCMS analysis</description> 3 <description>Create a summary of XCMS analysis</description>
4 4
5 <macros> 5 <macros>
6 <import>macros.xml</import> 6 <import>macros.xml</import>
7 </macros> 7 </macros>
8 8
9 <requirements> 9 <requirements>
10 <requirement type="package" version="1.26.0">bioconductor-camera</requirement> 10 <requirement type="package" version="1.32.0">bioconductor-camera</requirement>
11 <requirement type="package" version="1.1_4">r-batch</requirement> 11 <requirement type="package" version="1.1_4">r-batch</requirement>
12 </requirements> 12 </requirements>
13 13
14 <expand macro="stdio"/> 14 <expand macro="stdio"/>
15 15
49 49
50 ============ 50 ============
51 Xcms.summary 51 Xcms.summary
52 ============ 52 ============
53 53
54 -----------
54 Description 55 Description
55 ----------- 56 -----------
56 57
57 This tool provide a HTML summary which summarizes your analysis using the [W4M] XCMS and CAMERA tools 58 This tool provide a HTML summary which summarizes your analysis using the [W4M] XCMS and CAMERA tools
58 59
59 60 -----------------
60 Workflow position 61 Workflow position
61 ----------------- 62 -----------------
62 63
63 **Upstream tools** 64 **Upstream tools**
64 65
65 +------------------------+------------------+----------------------+------------+ 66 ========================= ================= ===================== ==========
66 | Name | output file | format | parameter | 67 Name output file format parameter
67 +========================+==================+======================+============+ 68 ========================= ================= ===================== ==========
68 | xcms.xcmsSet | xset.RData | rdata.xcms.raw | RData file | 69 xcms.xcmsSet xset.RData rdata.xcms.raw RData file
69 +------------------------+------------------+----------------------+------------+ 70 ------------------------- ----------------- --------------------- ----------
70 | xcms.group | xset.RData | rdata.xcms.group | RData file | 71 xcms.group xset.RData rdata.xcms.group RData file
71 +------------------------+------------------+----------------------+------------+ 72 ------------------------- ----------------- --------------------- ----------
72 | xcms.retcor | xset.RData | rdata.xcms.retcor | RData file | 73 xcms.retcor xset.RData rdata.xcms.retcor RData file
73 +------------------------+------------------+----------------------+------------+ 74 ------------------------- ----------------- --------------------- ----------
74 | xcms.fillpeaks | xset.RData | rdata.xcms.fillpeaks | RData file | 75 xcms.fillpeaks xset.RData rdata.xcms.fillpeaks RData file
75 +------------------------+------------------+----------------------+------------+ 76 ------------------------- ----------------- --------------------- ----------
76 | CAMERA.annotate | xset.RData | rdata.camera.* | RData file | 77 CAMERA.annotate xset.RData rdata.camera.* RData file
77 +------------------------+------------------+----------------------+------------+ 78 ========================= ================= ===================== ==========
78 79
79 80
80 .. image:: xcms_summary_workflow.png 81 .. image:: xcms_summary_workflow.png
81 82
82 --------------------------------------------------- 83 ---------------------------------------------------
83 84
84 Changelog/News 85 Changelog/News
85 -------------- 86 --------------
87
88 **Version 1.0.4 - 13/02/2018**
89
90 - UPGRADE: upgrate the CAMERA version from 1.26.0 to 1.32.0
86 91
87 **Version 1.0.3 - 03/02/2017** 92 **Version 1.0.3 - 03/02/2017**
88 93
89 - IMPROVEMENT: xcms.summary can deal with merged individual data 94 - IMPROVEMENT: xcms.summary can deal with merged individual data
90 95