Mercurial > repos > lecorguille > xcms_summary

diff abims_xcms_summary.xml @ 35:79fe34cedc56 draft

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planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 088699d00f7e45bebb7da07bebc005c68df058d8
author lecorguille
date Wed, 05 Sep 2018 06:00:45 -0400
parents de3b88417327
children 12c802da5367
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--- a/abims_xcms_summary.xml	Fri Aug 31 09:03:14 2018 -0400
+++ b/abims_xcms_summary.xml	Wed Sep 05 06:00:45 2018 -0400
@@ -63,19 +63,19 @@
 
 **Upstream tools**
 
-========================= ================= ================================ ==========
-Name                      output file       format                           parameter
-========================= ================= ================================ ==========
-xcms.xcmsSet              xset.RData        rdata.xcms.findchrompeaks        RData file
-------------------------- ----------------- -------------------------------- ----------
-xcms.group                xset.RData        rdata.xcms.group                 RData file
-------------------------- ----------------- -------------------------------- ----------
-xcms.retcor               xset.RData        rdata.xcms.retcor                RData file
-------------------------- ----------------- -------------------------------- ----------
-xcms.fillpeaks            xset.RData        rdata.xcms.fillpeaks             RData file
-------------------------- ----------------- -------------------------------- ----------
-CAMERA.annotate           xset.RData        rdata.camera.*                   RData file
-========================= ================= ================================ ==========
+========================= =========================== ================================
+Name                      Output file                 Format
+========================= =========================== ================================
+xcms.findChromPeaks       xset.RData                  rdata.xcms.findchrompeaks
+------------------------- --------------------------- --------------------------------
+xcms.groupChromPeaks      ``*``.groupChromPeaks.RData rdata.xcms.group
+------------------------- --------------------------- --------------------------------
+xcms.adjustRtime          ``*``.adjustRtime.RData     rdata.xcms.retcor
+------------------------- --------------------------- --------------------------------
+xcms.fillChromPeaks       ``*``.fillChromPeaks.RData  rdata.xcms.fillpeaks
+------------------------- --------------------------- --------------------------------
+CAMERA.annotate           ``*``.annotate.*.RData      rdata.camera.``*``
+========================= =========================== ================================
 
 
 .. image:: xcms_summary_workflow.png