Mercurial > repos > lecorguille > xcms_summary

comparison abims_xcms_summary.xml @ 35:79fe34cedc56 draft

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planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 088699d00f7e45bebb7da07bebc005c68df058d8
author lecorguille
date Wed, 05 Sep 2018 06:00:45 -0400
parents de3b88417327
children 12c802da5367
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34:b857ddcd7964 35:79fe34cedc56
61 Workflow position 61 Workflow position
62 ----------------- 62 -----------------
63 63
64 **Upstream tools** 64 **Upstream tools**
65 65
66 ========================= ================= ================================ ========== 66 ========================= =========================== ================================
67 Name output file format parameter 67 Name Output file Format
68 ========================= ================= ================================ ========== 68 ========================= =========================== ================================
69 xcms.xcmsSet xset.RData rdata.xcms.findchrompeaks RData file 69 xcms.findChromPeaks xset.RData rdata.xcms.findchrompeaks
70 ------------------------- ----------------- -------------------------------- ---------- 70 ------------------------- --------------------------- --------------------------------
71 xcms.group xset.RData rdata.xcms.group RData file 71 xcms.groupChromPeaks ``*``.groupChromPeaks.RData rdata.xcms.group
72 ------------------------- ----------------- -------------------------------- ---------- 72 ------------------------- --------------------------- --------------------------------
73 xcms.retcor xset.RData rdata.xcms.retcor RData file 73 xcms.adjustRtime ``*``.adjustRtime.RData rdata.xcms.retcor
74 ------------------------- ----------------- -------------------------------- ---------- 74 ------------------------- --------------------------- --------------------------------
75 xcms.fillpeaks xset.RData rdata.xcms.fillpeaks RData file 75 xcms.fillChromPeaks ``*``.fillChromPeaks.RData rdata.xcms.fillpeaks
76 ------------------------- ----------------- -------------------------------- ---------- 76 ------------------------- --------------------------- --------------------------------
77 CAMERA.annotate xset.RData rdata.camera.* RData file 77 CAMERA.annotate ``*``.annotate.*.RData rdata.camera.``*``
78 ========================= ================= ================================ ========== 78 ========================= =========================== ================================
79 79
80 80
81 .. image:: xcms_summary_workflow.png 81 .. image:: xcms_summary_workflow.png
82 82
83 --------------------------------------------------- 83 ---------------------------------------------------