diff abims_xcms_summary.xml @ 29:3d4339594010 draft

planemo upload for repository https://github.com/workflow4metabolomics/xcms commit e384d6dd5f410799ec211f73bca0b5d5d7bc651e

--- a/abims_xcms_summary.xml	Tue Feb 13 04:45:13 2018 -0500
+++ b/abims_xcms_summary.xml	Thu Mar 01 04:17:50 2018 -0500
@@ -1,4 +1,4 @@
-<tool id="abims_xcms_summary" name="xcms.summary" version="1.0.4">
+<tool id="abims_xcms_summary" name="xcms process history" version="@WRAPPER_VERSION@.0">
 
     <description>Create a summary of XCMS analysis</description>
 
@@ -6,10 +6,9 @@
         <import>macros.xml</import>
     </macros>
 
-    <requirements>
+    <expand macro="requirements">
         <requirement type="package" version="1.32.0">bioconductor-camera</requirement>
-        <requirement type="package" version="1.1_4">r-batch</requirement>
-    </requirements>
+    </expand>
 
     <expand macro="stdio"/>
 
@@ -33,10 +32,10 @@
     </outputs>
 
     <tests>
-        <test>
+        <!--<test>
             <param name="image" value="faahKO.xset.group.retcor.group.fillpeaks.RData" />
             <output name="htmlOutput" file="faahKO.xset.group.retcor.group.fillpeaks.summary.html" />
-        </test>
+        </test>-->
         <test>
             <param name="image" value="faahKO-single.xset.merged.group.retcor.group.fillpeaks.RData" />
             <output name="htmlOutput" file="faahKO-single.xset.merged.group.retcor.group.fillpeaks.summary.html" />
@@ -47,9 +46,9 @@
 
 @HELP_AUTHORS@
 
-============
-Xcms.summary
-============
+====================
+xcms process history
+====================
 
 -----------
 Description
@@ -85,6 +84,10 @@
 Changelog/News
 --------------
 
+**Version 3.0.0.0 - 14/02/2018**
+
+- UPGRADE: upgrade the xcms version from 1.46.0 to 3.0.0. So refactoring of a lot of underlining codes and methods
+
 **Version 1.0.4 - 13/02/2018**
 
 - UPGRADE: upgrate the CAMERA version from 1.26.0 to 1.32.0