Mercurial > repos > lecorguille > xcms_summary

comparison abims_xcms_summary.xml @ 29:3d4339594010 draft

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planemo upload for repository https://github.com/workflow4metabolomics/xcms commit e384d6dd5f410799ec211f73bca0b5d5d7bc651e
author lecorguille
date Thu, 01 Mar 2018 04:17:50 -0500
parents 8ad83969888b
children 0b5521b78c92
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28:8ad83969888b 29:3d4339594010
1 <tool id="abims_xcms_summary" name="xcms.summary" version="1.0.4"> 1 <tool id="abims_xcms_summary" name="xcms process history" version="@WRAPPER_VERSION@.0">
2 2
3 <description>Create a summary of XCMS analysis</description> 3 <description>Create a summary of XCMS analysis</description>
4 4
5 <macros> 5 <macros>
6 <import>macros.xml</import> 6 <import>macros.xml</import>
7 </macros> 7 </macros>
8 8
9 <requirements> 9 <expand macro="requirements">
10 <requirement type="package" version="1.32.0">bioconductor-camera</requirement> 10 <requirement type="package" version="1.32.0">bioconductor-camera</requirement>
11 <requirement type="package" version="1.1_4">r-batch</requirement> 11 </expand>
12 </requirements>
13 12
14 <expand macro="stdio"/> 13 <expand macro="stdio"/>
15 14
16 <command><![CDATA[ 15 <command><![CDATA[
17 $__tool_directory__/xcms_summary.r 16 $__tool_directory__/xcms_summary.r
31 <outputs> 30 <outputs>
32 <data name="htmlOutput" format="html" label="xcms summary html" /> 31 <data name="htmlOutput" format="html" label="xcms summary html" />
33 </outputs> 32 </outputs>
34 33
35 <tests> 34 <tests>
36 <test> 35 <!--<test>
37 <param name="image" value="faahKO.xset.group.retcor.group.fillpeaks.RData" /> 36 <param name="image" value="faahKO.xset.group.retcor.group.fillpeaks.RData" />
38 <output name="htmlOutput" file="faahKO.xset.group.retcor.group.fillpeaks.summary.html" /> 37 <output name="htmlOutput" file="faahKO.xset.group.retcor.group.fillpeaks.summary.html" />
39 </test> 38 </test>-->
40 <test> 39 <test>
41 <param name="image" value="faahKO-single.xset.merged.group.retcor.group.fillpeaks.RData" /> 40 <param name="image" value="faahKO-single.xset.merged.group.retcor.group.fillpeaks.RData" />
42 <output name="htmlOutput" file="faahKO-single.xset.merged.group.retcor.group.fillpeaks.summary.html" /> 41 <output name="htmlOutput" file="faahKO-single.xset.merged.group.retcor.group.fillpeaks.summary.html" />
43 </test> 42 </test>
44 </tests> 43 </tests>
45 44
46 <help><![CDATA[ 45 <help><![CDATA[
47 46
48 @HELP_AUTHORS@ 47 @HELP_AUTHORS@
49 48
50 ============ 49 ====================
51 Xcms.summary 50 xcms process history
52 ============ 51 ====================
53 52
54 ----------- 53 -----------
55 Description 54 Description
56 ----------- 55 -----------
57 56
83 --------------------------------------------------- 82 ---------------------------------------------------
84 83
85 Changelog/News 84 Changelog/News
86 -------------- 85 --------------
87 86
87 **Version 3.0.0.0 - 14/02/2018**
88
89 - UPGRADE: upgrade the xcms version from 1.46.0 to 3.0.0. So refactoring of a lot of underlining codes and methods
90
88 **Version 1.0.4 - 13/02/2018** 91 **Version 1.0.4 - 13/02/2018**
89 92
90 - UPGRADE: upgrate the CAMERA version from 1.26.0 to 1.32.0 93 - UPGRADE: upgrate the CAMERA version from 1.26.0 to 1.32.0
91 94
92 **Version 1.0.3 - 03/02/2017** 95 **Version 1.0.3 - 03/02/2017**