Mercurial > repos > lecorguille > xcms_summary

diff abims_xcms_summary.xml @ 25:3a53e63555c7 draft

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planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 392e432529877680e80a7b338e20d69a42e53767
author lecorguille
date Mon, 03 Apr 2017 07:53:49 -0400
parents abb66f65f1af
children e6a6503d7d6d
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--- a/abims_xcms_summary.xml	Wed Mar 22 16:07:25 2017 -0400
+++ b/abims_xcms_summary.xml	Mon Apr 03 07:53:49 2017 -0400
@@ -57,6 +57,28 @@
 
 This tool provide a HTML summary which summarizes your analysis using the [W4M] XCMS and CAMERA tools
 
+-----------------
+Workflow position
+-----------------
+
+**Upstream tools**
+
+========================= ================= ===================== ==========
+Name                      output file       format                parameter
+========================= ================= ===================== ==========
+xcms.xcmsSet              xset.RData        rdata.xcms.raw        RData file
+------------------------- ----------------- --------------------- ----------
+xcms.group                xset.RData        rdata.xcms.group      RData file
+------------------------- ----------------- --------------------- ----------
+xcms.retcor               xset.RData        rdata.xcms.retcor     RData file
+------------------------- ----------------- --------------------- ----------
+xcms.fillpeaks            xset.RData        rdata.xcms.fillpeaks  RData file
+------------------------- ----------------- --------------------- ----------
+CAMERA.annotate           xset.RData        rdata.camera.*        RData file
+========================= ================= ===================== ==========
+
+
+.. image:: xcms_merge_workflow.png
 
 ---------------------------------------------------