Mercurial > repos > lecorguille > xcms_retcor
changeset 23:38fa090ae98f draft
planemo upload for repository https://github.com/workflow4metabolomics/xcms commit e1f22c9b6d39de7aabc6bb625f65aa5ba6a91312
author | lecorguille |
---|---|
date | Thu, 02 Mar 2017 08:22:37 -0500 |
parents | 411d2b9ea412 |
children | d45e409406ed |
files | xcms.r |
diffstat | 1 files changed, 5 insertions(+), 1 deletions(-) [+] |
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--- a/xcms.r Wed Mar 01 16:57:27 2017 -0500 +++ b/xcms.r Thu Mar 02 08:22:37 2017 -0500 @@ -161,6 +161,11 @@ cat("\t\tCOMPUTE\n") xset = do.call(thefunction, listArguments) +# check if there are no peaks +if (nrow(peaks(xset)) == 0) { + stop("No peaks were detected. You should review your settings") +} + cat("\n\n") @@ -170,7 +175,6 @@ #transform the files absolute pathways into relative pathways xset@filepaths<-sub(paste(getwd(),"/",sep="") ,"", xset@filepaths) - print(zipfile) if(exists("zipfile") && !is.null(zipfile) && (zipfile!="")) { #Modify the samples names (erase the path)