Mercurial > repos > lecorguille > xcms_merge
diff xcms_merge.xml @ 15:2c7d3db37974 draft
planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 088699d00f7e45bebb7da07bebc005c68df058d8
| author | lecorguille |
|---|---|
| date | Wed, 05 Sep 2018 05:57:56 -0400 |
| parents | 67ab853b89f3 |
| children | 40791ab6c06b |
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--- a/xcms_merge.xml Fri Aug 31 09:00:33 2018 -0400 +++ b/xcms_merge.xml Wed Sep 05 05:57:56 2018 -0400 @@ -102,17 +102,19 @@ **Upstream tools** -========================= ================= ============================== ========== -Name output file format parameter -========================= ================= ============================== ========== -xcms.xcmsSet xset.RData rdata.xcms.findchrompeaks RData file -------------------------- ----------------- ------------------------------ ---------- -xcms.xcmsSet xset.RData rdata.xcms.findchrompeaks RData file -------------------------- ----------------- ------------------------------ ---------- -xcms.xcmsSet xset.RData rdata.xcms.findchrompeaks RData file -------------------------- ----------------- ------------------------------ ---------- -... ... ... ... -========================= ================= ============================== ========== +========================= ===================== ============================== +Name Output file Format +========================= ===================== ============================== +xcms.findChromPeaks ``*``.raw.xset.RData rdata.xcms.findchrompeaks +------------------------- --------------------- ------------------------------ +xcms.findChromPeaks ``*``.raw.xset.RData rdata.xcms.findchrompeaks +------------------------- --------------------- ------------------------------ +xcms.findChromPeaks ``*``.raw.xset.RData rdata.xcms.findchrompeaks +------------------------- --------------------- ------------------------------ +... ... ... +------------------------- --------------------- ------------------------------ +Upload file [optional] sampleMetadata tabular +========================= ===================== ============================== **Downstream tools** @@ -120,7 +122,7 @@ =========================== ==================== ============================ Name Output file Format =========================== ==================== ============================ -xcms.group xset.RData rdata.xcms.findchrompeaks +xcms.groupChromPeaks xset.merged.RData rdata.xcms.findchrompeaks =========================== ==================== ============================ .. image:: xcms_merge_workflow.png @@ -161,7 +163,7 @@ xset.merged.RData: rdata.xcms.findchrompeaks format - | Rdata file that is necessary in the next step of the workflow "xcms.group". + | Rdata file that is necessary in the next step of the workflow "xcms.groupChromPeaks". ---------------------------------------------------