Mercurial > repos > lecorguille > xcms_merge

comparison xcms_merge.xml @ 15:2c7d3db37974 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 088699d00f7e45bebb7da07bebc005c68df058d8
author lecorguille
date Wed, 05 Sep 2018 05:57:56 -0400
parents 67ab853b89f3
children 40791ab6c06b
comparison
equal deleted inserted replaced
14:40ae497bdc57 15:2c7d3db37974
100 Workflow position 100 Workflow position
101 ----------------- 101 -----------------
102 102
103 **Upstream tools** 103 **Upstream tools**
104 104
105 ========================= ================= ============================== ========== 105 ========================= ===================== ==============================
106 Name output file format parameter 106 Name Output file Format
107 ========================= ================= ============================== ========== 107 ========================= ===================== ==============================
108 xcms.xcmsSet xset.RData rdata.xcms.findchrompeaks RData file 108 xcms.findChromPeaks ``*``.raw.xset.RData rdata.xcms.findchrompeaks
109 ------------------------- ----------------- ------------------------------ ---------- 109 ------------------------- --------------------- ------------------------------
110 xcms.xcmsSet xset.RData rdata.xcms.findchrompeaks RData file 110 xcms.findChromPeaks ``*``.raw.xset.RData rdata.xcms.findchrompeaks
111 ------------------------- ----------------- ------------------------------ ---------- 111 ------------------------- --------------------- ------------------------------
112 xcms.xcmsSet xset.RData rdata.xcms.findchrompeaks RData file 112 xcms.findChromPeaks ``*``.raw.xset.RData rdata.xcms.findchrompeaks
113 ------------------------- ----------------- ------------------------------ ---------- 113 ------------------------- --------------------- ------------------------------
114 ... ... ... ... 114 ... ... ...
115 ========================= ================= ============================== ========== 115 ------------------------- --------------------- ------------------------------
116 Upload file [optional] sampleMetadata tabular
117 ========================= ===================== ==============================
116 118
117 119
118 **Downstream tools** 120 **Downstream tools**
119 121
120 =========================== ==================== ============================ 122 =========================== ==================== ============================
121 Name Output file Format 123 Name Output file Format
122 =========================== ==================== ============================ 124 =========================== ==================== ============================
123 xcms.group xset.RData rdata.xcms.findchrompeaks 125 xcms.groupChromPeaks xset.merged.RData rdata.xcms.findchrompeaks
124 =========================== ==================== ============================ 126 =========================== ==================== ============================
125 127
126 .. image:: xcms_merge_workflow.png 128 .. image:: xcms_merge_workflow.png
127 129
128 ----------- 130 -----------
159 Output files 161 Output files
160 ------------ 162 ------------
161 163
162 xset.merged.RData: rdata.xcms.findchrompeaks format 164 xset.merged.RData: rdata.xcms.findchrompeaks format
163 165
164 | Rdata file that is necessary in the next step of the workflow "xcms.group". 166 | Rdata file that is necessary in the next step of the workflow "xcms.groupChromPeaks".
165 167
166 --------------------------------------------------- 168 ---------------------------------------------------
167 169
168 Changelog/News 170 Changelog/News
169 -------------- 171 --------------