comparison xcms_merge.r @ 24:bf452dc6e4b0 draft

planemo upload for repository https://github.com/workflow4metabolomics/tools-metabolomics/ commit eca29d4347fe2f4802091c4a06715232a6fd9253

23:2eb424218159

#!/usr/bin/env Rscript

#Import the different functions
source_local <- function(fname) {
  argv <- commandArgs(trailingOnly = FALSE); base_dir <- dirname(substring(argv[grep("--file=", argv)], 8)); source(paste(base_dir, fname, sep = "/"))
}
source_local("lib.r")

pkgs <- c("xcms", "batch")
loadAndDisplayPackages(pkgs)
cat("\n\n");

args <- parseCommandArgs(evaluate = FALSE) #interpretation of arguments given in command line as an R list of objects


cat("\tXSET MERGING...\n")

24:bf452dc6e4b0

#!/usr/bin/env Rscript

#Import the different functions
source_local <- function(fname) {
  argv <- commandArgs(trailingOnly = FALSE)
  base_dir <- dirname(substring(argv[grep("--file=", argv)], 8))
  source(paste(base_dir, fname, sep = "/"))
}
source_local("lib.r")

pkgs <- c("xcms", "batch")
loadAndDisplayPackages(pkgs)
cat("\n\n")

args <- parseCommandArgs(evaluate = FALSE) #interpretation of arguments given in command line as an R list of objects


cat("\tXSET MERGING...\n")