Mercurial > repos > lecorguille > xcms_group
changeset 8:8ac150e147c9 draft
planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 960f403303e1691bdd6137c46895feb333b36a82
author | lecorguille |
---|---|
date | Mon, 04 Jul 2016 08:43:55 -0400 |
parents | 75be85d996d9 |
children | 7a62871f68a1 |
files | macros.xml tool_dependencies.xml |
diffstat | 2 files changed, 29 insertions(+), 5 deletions(-) [+] |
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--- a/macros.xml Mon Apr 25 11:09:08 2016 -0400 +++ b/macros.xml Mon Jul 04 08:43:55 2016 -0400 @@ -3,9 +3,9 @@ <xml name="requirements"> <requirements> <requirement type="package" version="3.1.2">R</requirement> - <requirement type="package" version="0.4_1">r-snow</requirement> - <requirement type="package" version="1.44.0">bioconductor-xcms</requirement> - <requirement type="package" version="1.1_4">r-batch</requirement> + <requirement type="package" version="0.4_1">r-snow</requirement> + <requirement type="package" version="1.46.0">bioconductor-xcms</requirement> + <requirement type="package" version="1.1_4">r-batch</requirement> </requirements> </xml> <xml name="stdio"> @@ -26,6 +26,30 @@ sh -c "exit \$return" </token> + <!-- zipfile load for planemo test --> + + <token name="@COMMAND_ZIPFILE_LOAD@"> + #if $zipfile_load_conditional.zip_file: + zipfile $zipfile_load_conditional.zip_file + #end if + </token> + + <xml name="zipfile_load"> + <conditional name="zipfile_load_conditional"> + <param name="zipfile_load_select" type="select" label="Resubmit your zip file" help="Use only if you get a message which say that your original zip file have been deleted on the server." > + <option value="no" >no need</option> + <option value="yes" selected="peakgroups">yes</option> + </param> + <when value="no"> + </when> + <when value="yes"> + <param name="zip_file" type="data" format="no_unzip.zip,zip" label="Zip file" /> + </when> + </conditional> + </xml> + + + <token name="@HELP_AUTHORS@"> .. class:: infomark
--- a/tool_dependencies.xml Mon Apr 25 11:09:08 2016 -0400 +++ b/tool_dependencies.xml Mon Jul 04 08:43:55 2016 -0400 @@ -3,7 +3,7 @@ <package name="R" version="3.1.2"> <repository changeset_revision="1ca39eb16186" name="package_r_3_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> - <package name="bioconductor-xcms" version="1.44.0"> - <repository changeset_revision="0c38f7d43e08" name="package_bioconductor_xcms_1_44_0" owner="lecorguille" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + <package name="bioconductor-xcms" version="1.46.0"> + <repository changeset_revision="c473260f0322" name="package_bioconductor_xcms_1_46_0" owner="lecorguille" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> </tool_dependency>