Mercurial > repos > lecorguille > xcms_fillpeaks
changeset 5:061958ded240 draft
planemo upload
| author | lecorguille |
|---|---|
| date | Mon, 22 Feb 2016 17:07:24 -0500 |
| parents | 980a4556c5db |
| children | f00e39a4b0fb |
| files | Makefile README.rst abims_xcms_fillPeaks.xml planemo.sh |
| diffstat | 4 files changed, 64 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Makefile Mon Feb 22 17:07:24 2016 -0500 @@ -0,0 +1,23 @@ +# USAGE: make [install|clean] + +# -------- VARIABLE -------- + +OBJ=xcms_fillpeaks.tgz +DEP=abims_xcms_fillPeaks.xml tool_dependencies.xml repository_dependencies.xml static test-data + + +# ------------------------ + +all: $(OBJ) + +$(OBJ): $(DEP) + tar --exclude=".svn" -zchf $@ $^ + +# ------------------------ + +install: $(OBJ) + mv *.tgz ~ + +clean: + rm *.tgz +
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/README.rst Mon Feb 22 17:07:24 2016 -0500 @@ -0,0 +1,19 @@ + +Changelog/News +-------------- + +**Version 2.0.5 - 10/02/2016** + +- BUGFIX: better management of errors. Datasets remained green although the process failed + +- UPDATE: refactoring of internal management of inputs/outputs + +- UPDATE: refactoring to feed the new report tool + + +**Version 2.0.2 - 02/06/2015** + +- IMPROVEMENT: new datatype/dataset formats (rdata.xcms.raw, rdata.xcms.group, rdata.xcms.retcor ...) will facilitate the sequence of tools and so avoid incompatibility errors. + +- IMPROVEMENT: parameter labels have changed to facilitate their reading. +
--- a/abims_xcms_fillPeaks.xml Wed Jan 27 08:42:08 2016 -0500 +++ b/abims_xcms_fillPeaks.xml Mon Feb 22 17:07:24 2016 -0500 @@ -202,6 +202,27 @@ | **xset.fillPeaks.RData: RData file** +--------------------------------------------------- + +Changelog/News +-------------- + +**Version 2.0.5 - 10/02/2016** + +- BUGFIX: better management of errors. Datasets remained green although the process failed + +- UPDATE: refactoring of internal management of inputs/outputs + +- UPDATE: refactoring to feed the new report tool + + +**Version 2.0.2 - 02/06/2015** + +- IMPROVEMENT: new datatype/dataset formats (rdata.xcms.raw, rdata.xcms.group, rdata.xcms.retcor ...) will facilitate the sequence of tools and so avoid incompatibility errors. + +- IMPROVEMENT: parameter labels have changed to facilitate their reading. + + ]]></help> <citations>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/planemo.sh Mon Feb 22 17:07:24 2016 -0500 @@ -0,0 +1,1 @@ +planemo shed_init -f --name=xcms_fillpeaks --owner=lecorguille --description="[W4M][GC-MS] XCMS R Package - Preprocessing - Integrate areas of missing peaks" --homepage_url="http://workflow4metabolomics.org" --long_description="Part of the W4M project: http://workflow4metabolomics.org\n\nXCMS: http://www.bioconductor.org/packages/release/bioc/html/xcms.html\n\nFor each sample, identify peak groups where that sample is not represented. For each of those peak groups, integrate the signal in the region of that peak group and create a new peak.\n\nBEWARE: this tool don't come with its script. You will need to install the dedicated package_xcms_w4m_script too" --category="Metabolomics"