# HG changeset patch
# User lecorguille
# Date 1456178844 18000
# Node ID 061958ded24009a3df649ec4dcc495bd5000e5d8
# Parent  980a4556c5db32e9c0d91bc070f8f3061c9a91b6
planemo upload

diff -r 980a4556c5db -r 061958ded240 Makefile
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/Makefile	Mon Feb 22 17:07:24 2016 -0500
@@ -0,0 +1,23 @@
+# USAGE: make [install|clean]
+
+# -------- VARIABLE --------
+
+OBJ=xcms_fillpeaks.tgz
+DEP=abims_xcms_fillPeaks.xml tool_dependencies.xml repository_dependencies.xml static test-data
+
+
+# ------------------------
+
+all: $(OBJ)
+
+$(OBJ): $(DEP)
+	tar --exclude=".svn" -zchf $@ $^
+
+# ------------------------
+
+install: $(OBJ)
+	mv *.tgz ~
+
+clean:
+	rm *.tgz
+
diff -r 980a4556c5db -r 061958ded240 README.rst
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/README.rst	Mon Feb 22 17:07:24 2016 -0500
@@ -0,0 +1,19 @@
+
+Changelog/News
+--------------
+
+**Version 2.0.5 - 10/02/2016**
+
+- BUGFIX: better management of errors. Datasets remained green although the process failed
+
+- UPDATE: refactoring of internal management of inputs/outputs
+
+- UPDATE: refactoring to feed the new report tool
+
+
+**Version 2.0.2 - 02/06/2015**
+
+- IMPROVEMENT: new datatype/dataset formats (rdata.xcms.raw, rdata.xcms.group, rdata.xcms.retcor ...) will facilitate the sequence of tools and so avoid incompatibility errors.
+
+- IMPROVEMENT: parameter labels have changed to facilitate their reading.
+
diff -r 980a4556c5db -r 061958ded240 abims_xcms_fillPeaks.xml
--- a/abims_xcms_fillPeaks.xml	Wed Jan 27 08:42:08 2016 -0500
+++ b/abims_xcms_fillPeaks.xml	Mon Feb 22 17:07:24 2016 -0500
@@ -202,6 +202,27 @@
     | **xset.fillPeaks.RData: RData file**
 
 
+---------------------------------------------------
+
+Changelog/News
+--------------
+
+**Version 2.0.5 - 10/02/2016**
+
+- BUGFIX: better management of errors. Datasets remained green although the process failed
+
+- UPDATE: refactoring of internal management of inputs/outputs
+
+- UPDATE: refactoring to feed the new report tool
+
+
+**Version 2.0.2 - 02/06/2015**
+
+- IMPROVEMENT: new datatype/dataset formats (rdata.xcms.raw, rdata.xcms.group, rdata.xcms.retcor ...) will facilitate the sequence of tools and so avoid incompatibility errors.
+
+- IMPROVEMENT: parameter labels have changed to facilitate their reading.
+
+
     ]]></help>
 
     <citations>
diff -r 980a4556c5db -r 061958ded240 planemo.sh
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/planemo.sh	Mon Feb 22 17:07:24 2016 -0500
@@ -0,0 +1,1 @@
+planemo shed_init -f --name=xcms_fillpeaks --owner=lecorguille --description="[W4M][GC-MS] XCMS R Package - Preprocessing - Integrate areas of missing peaks" --homepage_url="http://workflow4metabolomics.org" --long_description="Part of the W4M project: http://workflow4metabolomics.org\n\nXCMS: http://www.bioconductor.org/packages/release/bioc/html/xcms.html\n\nFor each sample, identify peak groups where that sample is not represented. For each of those peak groups, integrate the signal in the region of that peak group and create a new peak.\n\nBEWARE: this tool don't come with its script. You will need to install the dedicated package_xcms_w4m_script too" --category="Metabolomics"