Mercurial > repos > lecorguille > xcms_fillpeaks
comparison abims_xcms_fillPeaks.xml @ 23:7e289788d37d draft
planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 87dc789d7cd70a3733a1ad0b5a427f4d5905795d
| author | lecorguille |
|---|---|
| date | Wed, 01 Mar 2017 16:58:07 -0500 |
| parents | a6938c381d4e |
| children | 0544bc5967ed |
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| 22:a6938c381d4e | 23:7e289788d37d |
|---|---|
| 33 <option value="MSW" >MSW</option> | 33 <option value="MSW" >MSW</option> |
| 34 </param> | 34 </param> |
| 35 | 35 |
| 36 <expand macro="input_peaklist"/> | 36 <expand macro="input_peaklist"/> |
| 37 | 37 |
| 38 <expand macro="file_load"/> | 38 <expand macro="input_file_load"/> |
| 39 | 39 |
| 40 </inputs> | 40 </inputs> |
| 41 | 41 |
| 42 <outputs> | 42 <outputs> |
| 43 <data name="xsetRData" format="rdata.xcms.fillpeaks" label="${image.name[:-6]}.fillPeaks.RData" /> | 43 <data name="xsetRData" format="rdata.xcms.fillpeaks" label="${image.name[:-6]}.fillPeaks.RData" /> |
| 68 <param name="convertRTMinute" value="false" /> | 68 <param name="convertRTMinute" value="false" /> |
| 69 <param name="peaklistBool" value="true" /> | 69 <param name="peaklistBool" value="true" /> |
| 70 <param name="numDigitsMZ" value="4" /> | 70 <param name="numDigitsMZ" value="4" /> |
| 71 <param name="numDigitsRT" value="1" /> | 71 <param name="numDigitsRT" value="1" /> |
| 72 </conditional> | 72 </conditional> |
| 73 <param name="file_load_conditional|file_load_select" value="yes" /> | 73 <expand macro="test_file_load_zip"/> |
| 74 <param name="file_load_conditional|inputs|input" value="zip_file" /> | |
| 75 <param name="file_load_conditional|inputs|zip_file" value="faahKO_reduce.zip" ftype="zip" /> | |
| 76 <output name="log"> | 74 <output name="log"> |
| 77 <assert_contents> | 75 <assert_contents> |
| 78 <has_text text="object with 4 samples" /> | 76 <has_text text="object with 4 samples" /> |
| 79 <has_text text="Time range: 2506-4484 seconds (41.8-74.7 minutes)" /> | 77 <has_text text="Time range: 2506-4484 seconds (41.8-74.7 minutes)" /> |
| 80 <has_text text="Mass range: 200.1-600 m/z" /> | 78 <has_text text="Mass range: 200.1-600 m/z" /> |
| 93 <param name="convertRTMinute" value="false" /> | 91 <param name="convertRTMinute" value="false" /> |
| 94 <param name="peaklistBool" value="true" /> | 92 <param name="peaklistBool" value="true" /> |
| 95 <param name="numDigitsMZ" value="4" /> | 93 <param name="numDigitsMZ" value="4" /> |
| 96 <param name="numDigitsRT" value="1" /> | 94 <param name="numDigitsRT" value="1" /> |
| 97 </conditional> | 95 </conditional> |
| 98 <param name="file_load_conditional|file_load_select" value="yes" /> | 96 <expand macro="test_file_load_single"/> |
| 99 <param name="file_load_conditional|inputs|input" value="single_file" /> | |
| 100 <param name="file_load_conditional|inputs|single_file" value="wt15.CDF,ko16.CDF,ko15.CDF,wt16.CDF" ftype="netcdf" /> | |
| 101 <output name="log"> | 97 <output name="log"> |
| 102 <assert_contents> | 98 <assert_contents> |
| 103 <has_text text="object with 4 samples" /> | 99 <has_text text="object with 4 samples" /> |
| 104 <has_text text="Time range: 2506-4484 seconds (41.8-74.7 minutes)" /> | 100 <has_text text="Time range: 2506-4484 seconds (41.8-74.7 minutes)" /> |
| 105 <has_text text="Mass range: 200.1-600 m/z" /> | 101 <has_text text="Mass range: 200.1-600 m/z" /> |