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annotate macros.xml @ 4:9fa5856f6184 draft

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planemo upload commit 98cb24e57c0ce8ac3294e8c7e87aee337ac29f62
author lecorguille
date Thu, 28 Jul 2016 11:11:38 -0400
parents b2032600d98f
children 03fdfbd914ab
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1 <?xml version="1.0"?>
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2 <macros>
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3 <xml name="requirements">
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4 <requirements>
4
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5 <requirement type="package" version="0.4_1">r-snow</requirement>
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6 <requirement type="package" version="1.7.5">r-ipo</requirement>
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7 <requirement type="package" version="1.1_4">r-batch</requirement>
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8 </requirements>
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9 </xml>
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10 <xml name="stdio">
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11 <stdio>
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12 <exit_code range="1" level="fatal" />
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13 </stdio>
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14 </xml>
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15
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16 <token name="@COMMAND_SCRIPT@">
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17 LANG=C Rscript $__tool_directory__/ipo.r
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18 </token>
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19
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20 <token name="@COMMAND_LOG_EXIT@">
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21 ;
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22 return=\$?;
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23 mv log.txt $log;
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24 cat $log;
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25 sh -c "exit \$return"
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26 </token>
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27
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28 <token name="@HELP_AUTHORS@">
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29 .. class:: infomark
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30
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31 **Authors** Gunnar Libiseller, Michaela Dvorzak, Ulrike Kleb, Edgar Gander, Tobias Eisenberg, Frank Madeo, Steffen Neumann, Gert Trausinger, Frank Sinner, Thomas Pieber and Christoph Magnes
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32
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33 .. class:: infomark
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34
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35 **Galaxy integration** ABiMS TEAM - UPMC/CNRS - Station biologique de Roscoff and Yann Guitton yann.guitton@oniris-nantes.fr - part of Workflow4Metabolomics.org [W4M]
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36
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37 | Contact support@workflow4metabolomics.org for any questions or concerns about the Galaxy implementation of this tool.
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38
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39 ---------------------------------------------------
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40
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41 </token>
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42
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43
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44 <xml name="citation">
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45 <citations>
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46 <citation type="doi">10.1186/s12859-015-0562-8</citation>
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47 <citation type="doi">10.1093/bioinformatics/btu813</citation>
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48 </citations>
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49 </xml>
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50 </macros>