Mercurial > repos > lecorguille > camera_annotate

annotate qsub.err @ 12:db270f704d93 draft

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planemo upload commit d8cc436fd91f5748dc396d0527a0a303d3221835-dirty
author lecorguille
date Thu, 14 Apr 2016 11:00:27 -0400
parents d33e0ed5f32a
children ba7db5b70639
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1 /home/fr2424/sib/lecorguille/.planemo/gx_venv/lib/python2.7/site-packages/pip/_vendor/requests/packages/urllib3/util/ssl_.py:315: SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. For more information, see https://urllib3.readthedocs.org/en/latest/security.html#snimissingwarning.
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2 SNIMissingWarning
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3 /home/fr2424/sib/lecorguille/.planemo/gx_venv/lib/python2.7/site-packages/pip/_vendor/requests/packages/urllib3/util/ssl_.py:120: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. For more information, see https://urllib3.readthedocs.org/en/latest/security.html#insecureplatformwarning.
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4 InsecurePlatformWarning
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5 You are using pip version 8.0.2+gx2, however version 8.1.1 is available.
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6 You should consider upgrading via the 'pip install --upgrade pip' command.
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7 You are using pip version 8.0.2+gx2, however version 8.1.1 is available.
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8 You should consider upgrading via the 'pip install --upgrade pip' command.
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9 /home/fr2424/sib/lecorguille/.planemo/gx_venv/lib/python2.7/site-packages/pip/_vendor/requests/packages/urllib3/util/ssl_.py:315: SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. For more information, see https://urllib3.readthedocs.org/en/latest/security.html#snimissingwarning.
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10 SNIMissingWarning
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11 /home/fr2424/sib/lecorguille/.planemo/gx_venv/lib/python2.7/site-packages/pip/_vendor/requests/packages/urllib3/util/ssl_.py:120: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. For more information, see https://urllib3.readthedocs.org/en/latest/security.html#insecureplatformwarning.
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12 InsecurePlatformWarning
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13 You are using pip version 8.0.2+gx2, however version 8.1.1 is available.
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14 You should consider upgrading via the 'pip install --upgrade pip' command.
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15 /home/fr2424/sib/lecorguille/.planemo/gx_venv/lib/python2.7/site-packages/pip/_vendor/requests/packages/urllib3/util/ssl_.py:315: SNIMissingWarning: An HTTPS request has been made, but the SNI (Subject Name Indication) extension to TLS is not available on this platform. This may cause the server to present an incorrect TLS certificate, which can cause validation failures. For more information, see https://urllib3.readthedocs.org/en/latest/security.html#snimissingwarning.
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16 SNIMissingWarning
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17 /home/fr2424/sib/lecorguille/.planemo/gx_venv/lib/python2.7/site-packages/pip/_vendor/requests/packages/urllib3/util/ssl_.py:120: InsecurePlatformWarning: A true SSLContext object is not available. This prevents urllib3 from configuring SSL appropriately and may cause certain SSL connections to fail. For more information, see https://urllib3.readthedocs.org/en/latest/security.html#insecureplatformwarning.
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18 InsecurePlatformWarning
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19 You are using pip version 8.0.2+gx2, however version 8.1.1 is available.
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20 You should consider upgrading via the 'pip install --upgrade pip' command.
01a900f2e464 planemo upload commit d8cc436fd91f5748dc396d0527a0a303d3221835
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21 You are using pip version 8.0.2+gx2, however version 8.1.1 is available.
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22 You should consider upgrading via the 'pip install --upgrade pip' command.
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23 DEBUG:galaxy.app:python path is: /tmp/714419.1.short.q/tmp6zzhM3/galaxy-dev/lib, /tmp/714419.1.short.q/tmp6zzhM3/galaxy-dev/lib, /tmp/714419.1.short.q/tmp6zzhM3/galaxy-dev/test, /tmp/714419.1.short.q/tmp6zzhM3/galaxy-dev, /home/fr2424/sib/lecorguille/.planemo/gx_venv/lib/python27.zip, /home/fr2424/sib/lecorguille/.planemo/gx_venv/lib/python2.7, /home/fr2424/sib/lecorguille/.planemo/gx_venv/lib/python2.7/plat-linux2, /home/fr2424/sib/lecorguille/.planemo/gx_venv/lib/python2.7/lib-tk, /home/fr2424/sib/lecorguille/.planemo/gx_venv/lib/python2.7/lib-old, /home/fr2424/sib/lecorguille/.planemo/gx_venv/lib/python2.7/lib-dynload, /opt/6.x/python-2.7.2/lib/python2.7, /opt/6.x/python-2.7.2/lib/python2.7/plat-linux2, /opt/6.x/python-2.7.2/lib/python2.7/lib-tk, /home/fr2424/sib/lecorguille/.planemo/gx_venv/lib/python2.7/site-packages
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24 INFO:galaxy.config:Logging at '10' level to 'stdout'
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25 /home/fr2424/sib/lecorguille/.planemo/gx_venv/lib/python2.7/site-packages/sqlalchemy/sql/sqltypes.py:565: SAWarning: Dialect sqlite+pysqlite does *not* support Decimal objects natively, and SQLAlchemy must convert from floating point - rounding errors and other issues may occur. Please consider storing Decimal numbers as strings or integers on this platform for lossless storage.
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26 'storage.' % (dialect.name, dialect.driver))
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27 CAMERA.annotate ( testtoolshed.g2.bx.psu.edu/repos/lecorguille/camera_annotate/abims_CAMERA_annotateDiffreport/2.1.3 ) > Test-1 ... ERROR
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29 ======================================================================
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30 ERROR: CAMERA.annotate ( testtoolshed.g2.bx.psu.edu/repos/lecorguille/camera_annotate/abims_CAMERA_annotateDiffreport/2.1.3 ) > Test-1
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31 ----------------------------------------------------------------------
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32 Traceback (most recent call last):
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33 File "/tmp/714419.1.short.q/tmp6zzhM3/galaxy-dev/test/functional/test_toolbox.py", line 289, in test_tool
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34 self.do_it( td )
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35 File "/tmp/714419.1.short.q/tmp6zzhM3/galaxy-dev/test/functional/test_toolbox.py", line 38, in do_it
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36 stage_data_in_history( galaxy_interactor, testdef.test_data(), test_history, shed_tool_id )
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37 File "/tmp/714419.1.short.q/tmp6zzhM3/galaxy-dev/test/base/interactor.py", line 40, in stage_data_in_history
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38 upload_wait = galaxy_interactor.stage_data_async( test_data, history, shed_tool_id )
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39 File "/tmp/714419.1.short.q/tmp6zzhM3/galaxy-dev/test/base/interactor.py", line 174, in stage_data_async
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40 "files_0|file_data": open( file_name, 'rb')
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41 IOError: [Errno 2] No such file or directory: u'/tmp/714419.1.short.q/tmp6zzhM3/shed_tools/testtoolshed.g2.bx.psu.edu/repos/lecorguille/camera_annotate/d33e0ed5f32a/camera_annotate/test-data/sacuri_dir_root.zip'
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42 -------------------- >> begin captured logging << --------------------
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43 requests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost
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44 galaxy.web.framework.webapp: INFO: Session authenticated using Galaxy master api key
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45 requests.packages.urllib3.connectionpool: DEBUG: "GET /api/users?key=test_key HTTP/1.1" 200 None
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46 requests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost
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47 galaxy.web.framework.webapp: INFO: Session authenticated using Galaxy master api key
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48 requests.packages.urllib3.connectionpool: DEBUG: "POST /api/users HTTP/1.1" 200 None
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49 requests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost
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50 galaxy.web.framework.webapp: INFO: Session authenticated using Galaxy master api key
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51 requests.packages.urllib3.connectionpool: DEBUG: "POST /api/users/2891970512fa2d5a/api_key HTTP/1.1" 200 None
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52 requests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost
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53 requests.packages.urllib3.connectionpool: DEBUG: "POST /api/histories HTTP/1.1" 200 None
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54 requests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost
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55 galaxy.tools: DEBUG: Validated and populated state for tool request (26.178 ms)
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56 galaxy.tools.actions.upload: DEBUG: Persisted uploads (29.632 ms)
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57 galaxy.tools.actions.upload: DEBUG: Checked and cleaned uploads (450.856 ms)
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58 galaxy.tools.actions.upload_common: INFO: tool upload1 created job id 1
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59 galaxy.tools.actions.upload: DEBUG: Created upload job (229.375 ms)
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60 galaxy.tools.execute: DEBUG: Tool [upload1] created job [1] (710.457 ms)
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61 galaxy.tools.execute: DEBUG: Executed all jobs for tool request: (759.156 ms)
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62 requests.packages.urllib3.connectionpool: DEBUG: "POST /api/tools HTTP/1.1" 200 None
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63 requests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost
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64 requests.packages.urllib3.connectionpool: DEBUG: "GET /api/histories/2891970512fa2d5a?key=d60dee226c7d93c090d051c4571345f0 HTTP/1.1" 200 None
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65 requests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost
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66 galaxy.jobs: DEBUG: (1) Working directory for job is: /tmp/714419.1.short.q/tmp6zzhM3/job_working_directory/000/1
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67 requests.packages.urllib3.connectionpool: DEBUG: "GET /api/histories/2891970512fa2d5a?key=d60dee226c7d93c090d051c4571345f0 HTTP/1.1" 200 None
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68 requests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost
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69 galaxy.jobs.handler: DEBUG: (1) Dispatching to local runner
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70 galaxy.jobs: DEBUG: (1) Persisting job destination (destination id: local:///)
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71 galaxy.jobs.runners: DEBUG: Job [1] queued (204.971 ms)
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72 galaxy.jobs.handler: INFO: (1) Job dispatched
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73 requests.packages.urllib3.connectionpool: DEBUG: "GET /api/histories/2891970512fa2d5a?key=d60dee226c7d93c090d051c4571345f0 HTTP/1.1" 200 None
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74 requests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost
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75 requests.packages.urllib3.connectionpool: DEBUG: "GET /api/histories/2891970512fa2d5a?key=d60dee226c7d93c090d051c4571345f0 HTTP/1.1" 200 None
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76 requests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost
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77 requests.packages.urllib3.connectionpool: DEBUG: "GET /api/histories/2891970512fa2d5a?key=d60dee226c7d93c090d051c4571345f0 HTTP/1.1" 200 None
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78 requests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost
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79 galaxy.tools.deps: DEBUG: Building dependency shell command for dependency 'samtools'
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80 galaxy.tools.deps: DEBUG: Find dependency samtools version None
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81 galaxy.tools.deps: DEBUG: Resolver tool_shed_packages returned <galaxy.tools.deps.resolvers.NullDependency object at 0x420c0d0> (isnull? True)
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82 galaxy.tools.deps: DEBUG: Resolver galaxy_packages returned <galaxy.tools.deps.resolvers.NullDependency object at 0x420c0d0> (isnull? True)
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83 galaxy.tools.deps: DEBUG: Resolver galaxy_packages returned <galaxy.tools.deps.resolvers.NullDependency object at 0x420c0d0> (isnull? True)
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84 galaxy.tools.deps: DEBUG: Resolver conda returned <galaxy.tools.deps.resolvers.NullDependency object at 0x420c0d0> (isnull? True)
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85 galaxy.tools.deps: DEBUG: Resolver conda returned <galaxy.tools.deps.resolvers.NullDependency object at 0x420c0d0> (isnull? True)
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86 galaxy.tools.deps: WARNING: Failed to resolve dependency on 'samtools', ignoring
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87 galaxy.jobs.command_factory: INFO: Built script [/tmp/714419.1.short.q/tmp6zzhM3/job_working_directory/000/1/tool_script.sh] for tool command[python /tmp/714419.1.short.q/tmp6zzhM3/galaxy-dev/tools/data_source/upload.py /tmp/714419.1.short.q/tmp6zzhM3/galaxy-dev /tmp/714419.1.short.q/tmp6zzhM3/tmp/tmpjP3KUB /tmp/714419.1.short.q/tmp6zzhM3/tmp/tmpNZ2o6u 1:/tmp/714419.1.short.q/tmp6zzhM3/job_working_directory/000/1/dataset_1_files:/tmp/714419.1.short.q/tmp6zzhM3/files/000/dataset_1.dat]
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88 requests.packages.urllib3.connectionpool: DEBUG: "GET /api/histories/2891970512fa2d5a?key=d60dee226c7d93c090d051c4571345f0 HTTP/1.1" 200 None
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89 requests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost
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90 requests.packages.urllib3.connectionpool: DEBUG: "GET /api/histories/2891970512fa2d5a?key=d60dee226c7d93c090d051c4571345f0 HTTP/1.1" 200 None
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91 requests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost
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92 galaxy.jobs.runners: DEBUG: (1) command is: /tmp/714419.1.short.q/tmp6zzhM3/job_working_directory/000/1/tool_script.sh; return_code=$?; python "/tmp/714419.1.short.q/tmp6zzhM3/job_working_directory/000/1/set_metadata_MqaJuZ.py" "/tmp/714419.1.short.q/tmp6zzhM3/tmp/tmpjP3KUB" "/tmp/714419.1.short.q/tmp6zzhM3/job_working_directory/000/1/galaxy.json" "/tmp/714419.1.short.q/tmp6zzhM3/job_working_directory/000/1/metadata_in_HistoryDatasetAssociation_1_GavpWf,/tmp/714419.1.short.q/tmp6zzhM3/job_working_directory/000/1/metadata_kwds_HistoryDatasetAssociation_1_X9MeXX,/tmp/714419.1.short.q/tmp6zzhM3/job_working_directory/000/1/metadata_out_HistoryDatasetAssociation_1_SKjWPt,/tmp/714419.1.short.q/tmp6zzhM3/job_working_directory/000/1/metadata_results_HistoryDatasetAssociation_1_WKXGCU,/tmp/714419.1.short.q/tmp6zzhM3/files/000/dataset_1.dat,/tmp/714419.1.short.q/tmp6zzhM3/job_working_directory/000/1/metadata_override_HistoryDatasetAssociation_1_48OdEJ" 5242880; sh -c "exit $return_code"
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93 requests.packages.urllib3.connectionpool: DEBUG: "GET /api/histories/2891970512fa2d5a?key=d60dee226c7d93c090d051c4571345f0 HTTP/1.1" 200 None
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94 galaxy.jobs.runners.local: DEBUG: (1) executing job script: /tmp/714419.1.short.q/tmp6zzhM3/job_working_directory/000/1/galaxy_1.sh
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95 requests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost
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96 galaxy.jobs: DEBUG: (1) Persisting job destination (destination id: local:///)
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97 requests.packages.urllib3.connectionpool: DEBUG: "GET /api/histories/2891970512fa2d5a?key=d60dee226c7d93c090d051c4571345f0 HTTP/1.1" 200 None
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98 requests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost
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99 requests.packages.urllib3.connectionpool: DEBUG: "GET /api/histories/2891970512fa2d5a?key=d60dee226c7d93c090d051c4571345f0 HTTP/1.1" 200 None
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100 requests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost
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101 requests.packages.urllib3.connectionpool: DEBUG: "GET /api/histories/2891970512fa2d5a?key=d60dee226c7d93c090d051c4571345f0 HTTP/1.1" 200 None
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102 requests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost
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103 requests.packages.urllib3.connectionpool: DEBUG: "GET /api/histories/2891970512fa2d5a?key=d60dee226c7d93c090d051c4571345f0 HTTP/1.1" 200 None
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104 requests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost
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105 requests.packages.urllib3.connectionpool: DEBUG: "GET /api/histories/2891970512fa2d5a?key=d60dee226c7d93c090d051c4571345f0 HTTP/1.1" 200 None
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106 requests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost
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107 requests.packages.urllib3.connectionpool: DEBUG: "GET /api/histories/2891970512fa2d5a?key=d60dee226c7d93c090d051c4571345f0 HTTP/1.1" 200 None
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108 requests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost
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109 requests.packages.urllib3.connectionpool: DEBUG: "GET /api/histories/2891970512fa2d5a?key=d60dee226c7d93c090d051c4571345f0 HTTP/1.1" 200 None
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110 requests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost
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111 requests.packages.urllib3.connectionpool: DEBUG: "GET /api/histories/2891970512fa2d5a?key=d60dee226c7d93c090d051c4571345f0 HTTP/1.1" 200 None
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112 requests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost
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113 requests.packages.urllib3.connectionpool: DEBUG: "GET /api/histories/2891970512fa2d5a?key=d60dee226c7d93c090d051c4571345f0 HTTP/1.1" 200 None
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114 requests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost
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115 requests.packages.urllib3.connectionpool: DEBUG: "GET /api/histories/2891970512fa2d5a?key=d60dee226c7d93c090d051c4571345f0 HTTP/1.1" 200 None
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116 requests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost
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117 requests.packages.urllib3.connectionpool: DEBUG: "GET /api/histories/2891970512fa2d5a?key=d60dee226c7d93c090d051c4571345f0 HTTP/1.1" 200 None
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118 requests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost
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119 requests.packages.urllib3.connectionpool: DEBUG: "GET /api/histories/2891970512fa2d5a?key=d60dee226c7d93c090d051c4571345f0 HTTP/1.1" 200 None
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120 requests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost
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121 requests.packages.urllib3.connectionpool: DEBUG: "GET /api/histories/2891970512fa2d5a?key=d60dee226c7d93c090d051c4571345f0 HTTP/1.1" 200 None
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122 requests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost
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123 requests.packages.urllib3.connectionpool: DEBUG: "GET /api/histories/2891970512fa2d5a?key=d60dee226c7d93c090d051c4571345f0 HTTP/1.1" 200 None
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124 requests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost
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125 requests.packages.urllib3.connectionpool: DEBUG: "GET /api/histories/2891970512fa2d5a?key=d60dee226c7d93c090d051c4571345f0 HTTP/1.1" 200 None
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126 requests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost
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127 requests.packages.urllib3.connectionpool: DEBUG: "GET /api/histories/2891970512fa2d5a?key=d60dee226c7d93c090d051c4571345f0 HTTP/1.1" 200 None
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128 requests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost
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129 requests.packages.urllib3.connectionpool: DEBUG: "GET /api/histories/2891970512fa2d5a?key=d60dee226c7d93c090d051c4571345f0 HTTP/1.1" 200 None
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130 requests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost
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131 requests.packages.urllib3.connectionpool: DEBUG: "GET /api/histories/2891970512fa2d5a?key=d60dee226c7d93c090d051c4571345f0 HTTP/1.1" 200 None
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132 requests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost
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133 requests.packages.urllib3.connectionpool: DEBUG: "GET /api/histories/2891970512fa2d5a?key=d60dee226c7d93c090d051c4571345f0 HTTP/1.1" 200 None
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134 requests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost
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135 requests.packages.urllib3.connectionpool: DEBUG: "GET /api/histories/2891970512fa2d5a?key=d60dee226c7d93c090d051c4571345f0 HTTP/1.1" 200 None
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136 requests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost
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137 requests.packages.urllib3.connectionpool: DEBUG: "GET /api/histories/2891970512fa2d5a?key=d60dee226c7d93c090d051c4571345f0 HTTP/1.1" 200 None
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138 requests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost
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139 requests.packages.urllib3.connectionpool: DEBUG: "GET /api/histories/2891970512fa2d5a?key=d60dee226c7d93c090d051c4571345f0 HTTP/1.1" 200 None
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140 requests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost
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141 requests.packages.urllib3.connectionpool: DEBUG: "GET /api/histories/2891970512fa2d5a?key=d60dee226c7d93c090d051c4571345f0 HTTP/1.1" 200 None
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142 requests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost
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143 requests.packages.urllib3.connectionpool: DEBUG: "GET /api/histories/2891970512fa2d5a?key=d60dee226c7d93c090d051c4571345f0 HTTP/1.1" 200 None
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144 requests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost
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145 requests.packages.urllib3.connectionpool: DEBUG: "GET /api/histories/2891970512fa2d5a?key=d60dee226c7d93c090d051c4571345f0 HTTP/1.1" 200 None
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146 requests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost
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147 requests.packages.urllib3.connectionpool: DEBUG: "GET /api/histories/2891970512fa2d5a?key=d60dee226c7d93c090d051c4571345f0 HTTP/1.1" 200 None
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148 requests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost
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149 requests.packages.urllib3.connectionpool: DEBUG: "GET /api/histories/2891970512fa2d5a?key=d60dee226c7d93c090d051c4571345f0 HTTP/1.1" 200 None
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150 requests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost
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151 requests.packages.urllib3.connectionpool: DEBUG: "GET /api/histories/2891970512fa2d5a?key=d60dee226c7d93c090d051c4571345f0 HTTP/1.1" 200 None
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152 requests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost
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153 requests.packages.urllib3.connectionpool: DEBUG: "GET /api/histories/2891970512fa2d5a?key=d60dee226c7d93c090d051c4571345f0 HTTP/1.1" 200 None
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154 requests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost
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155 requests.packages.urllib3.connectionpool: DEBUG: "GET /api/histories/2891970512fa2d5a?key=d60dee226c7d93c090d051c4571345f0 HTTP/1.1" 200 None
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156 requests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost
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157 requests.packages.urllib3.connectionpool: DEBUG: "GET /api/histories/2891970512fa2d5a?key=d60dee226c7d93c090d051c4571345f0 HTTP/1.1" 200 None
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158 requests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost
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159 requests.packages.urllib3.connectionpool: DEBUG: "GET /api/histories/2891970512fa2d5a?key=d60dee226c7d93c090d051c4571345f0 HTTP/1.1" 200 None
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160 requests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost
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161 galaxy.jobs.runners.local: DEBUG: execution finished: /tmp/714419.1.short.q/tmp6zzhM3/job_working_directory/000/1/galaxy_1.sh
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162 requests.packages.urllib3.connectionpool: DEBUG: "GET /api/histories/2891970512fa2d5a?key=d60dee226c7d93c090d051c4571345f0 HTTP/1.1" 200 None
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163 requests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost
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164 galaxy.datatypes.metadata: DEBUG: loading metadata from file for: HistoryDatasetAssociation 1
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165 requests.packages.urllib3.connectionpool: DEBUG: "GET /api/histories/2891970512fa2d5a?key=d60dee226c7d93c090d051c4571345f0 HTTP/1.1" 200 None
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166 requests.packages.urllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost
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167 requests.packages.urllib3.connectionpool: DEBUG: "GET /api/histories/2891970512fa2d5a?key=d60dee226c7d93c090d051c4571345f0 HTTP/1.1" 200 None
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168 --------------------- >> end captured logging << ---------------------
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169
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170 ----------------------------------------------------------------------
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171 XML: /tmp/714419.1.short.q/tmp6zzhM3/xunit.xml
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172 ----------------------------------------------------------------------
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173 Ran 1 test in 8.920s
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174
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175 FAILED (errors=1)
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176 cp: cannot stat `/tmp/714419.1.short.q/tmp6zzhM3/jobfiles/*': No such file or directory
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177 There were problems with 1 test(s) - out of 1 test(s) executed. See /projet/fr2424/sib/lecorguille/script/git/w4m/camera/galaxy/camera_annotate/tool_test_output.html for detailed breakdown.