annotate macros.xml @ 9:c02d80efba80 draft

planemo upload commit d8cc436fd91f5748dc396d0527a0a303d3221835
author lecorguille
date Sun, 10 Apr 2016 08:14:59 -0400
parents
children 01a900f2e464
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
9
c02d80efba80 planemo upload commit d8cc436fd91f5748dc396d0527a0a303d3221835
lecorguille
parents:
diff changeset
1 <?xml version="1.0"?>
c02d80efba80 planemo upload commit d8cc436fd91f5748dc396d0527a0a303d3221835
lecorguille
parents:
diff changeset
2 <macros>
c02d80efba80 planemo upload commit d8cc436fd91f5748dc396d0527a0a303d3221835
lecorguille
parents:
diff changeset
3 <xml name="requirements">
c02d80efba80 planemo upload commit d8cc436fd91f5748dc396d0527a0a303d3221835
lecorguille
parents:
diff changeset
4 <requirements>
c02d80efba80 planemo upload commit d8cc436fd91f5748dc396d0527a0a303d3221835
lecorguille
parents:
diff changeset
5 <requirement type="package" version="3.1.2">R</requirement>
c02d80efba80 planemo upload commit d8cc436fd91f5748dc396d0527a0a303d3221835
lecorguille
parents:
diff changeset
6 <requirement type="package" version="0.4_1">r-snow</requirement>
c02d80efba80 planemo upload commit d8cc436fd91f5748dc396d0527a0a303d3221835
lecorguille
parents:
diff changeset
7 <requirement type="package" version="1.44.0">bioconductor-camera</requirement>
c02d80efba80 planemo upload commit d8cc436fd91f5748dc396d0527a0a303d3221835
lecorguille
parents:
diff changeset
8 <requirement type="package" version="1.1_4">r-batch</requirement>
c02d80efba80 planemo upload commit d8cc436fd91f5748dc396d0527a0a303d3221835
lecorguille
parents:
diff changeset
9 <requirement type="package" version="1.3.20">graphicsmagick</requirement>
c02d80efba80 planemo upload commit d8cc436fd91f5748dc396d0527a0a303d3221835
lecorguille
parents:
diff changeset
10 </requirements>
c02d80efba80 planemo upload commit d8cc436fd91f5748dc396d0527a0a303d3221835
lecorguille
parents:
diff changeset
11 </xml>
c02d80efba80 planemo upload commit d8cc436fd91f5748dc396d0527a0a303d3221835
lecorguille
parents:
diff changeset
12 <xml name="stdio">
c02d80efba80 planemo upload commit d8cc436fd91f5748dc396d0527a0a303d3221835
lecorguille
parents:
diff changeset
13 <stdio>
c02d80efba80 planemo upload commit d8cc436fd91f5748dc396d0527a0a303d3221835
lecorguille
parents:
diff changeset
14 <exit_code range="1" level="fatal" />
c02d80efba80 planemo upload commit d8cc436fd91f5748dc396d0527a0a303d3221835
lecorguille
parents:
diff changeset
15 </stdio>
c02d80efba80 planemo upload commit d8cc436fd91f5748dc396d0527a0a303d3221835
lecorguille
parents:
diff changeset
16 </xml>
c02d80efba80 planemo upload commit d8cc436fd91f5748dc396d0527a0a303d3221835
lecorguille
parents:
diff changeset
17
c02d80efba80 planemo upload commit d8cc436fd91f5748dc396d0527a0a303d3221835
lecorguille
parents:
diff changeset
18 <token name="@COMMAND_CAMERA_SCRIPT@">
c02d80efba80 planemo upload commit d8cc436fd91f5748dc396d0527a0a303d3221835
lecorguille
parents:
diff changeset
19 LANG=C Rscript $__tool_directory__/CAMERA.r
c02d80efba80 planemo upload commit d8cc436fd91f5748dc396d0527a0a303d3221835
lecorguille
parents:
diff changeset
20 </token>
c02d80efba80 planemo upload commit d8cc436fd91f5748dc396d0527a0a303d3221835
lecorguille
parents:
diff changeset
21
c02d80efba80 planemo upload commit d8cc436fd91f5748dc396d0527a0a303d3221835
lecorguille
parents:
diff changeset
22 <token name="@HELP_AUTHORS@">
c02d80efba80 planemo upload commit d8cc436fd91f5748dc396d0527a0a303d3221835
lecorguille
parents:
diff changeset
23 .. class:: infomark
c02d80efba80 planemo upload commit d8cc436fd91f5748dc396d0527a0a303d3221835
lecorguille
parents:
diff changeset
24
c02d80efba80 planemo upload commit d8cc436fd91f5748dc396d0527a0a303d3221835
lecorguille
parents:
diff changeset
25 **Authors** Colin A. Smith csmith@scripps.edu, Ralf Tautenhahn rtautenh@gmail.com, Steffen Neumann sneumann@ipb-halle.de, Paul Benton hpaul.benton08@imperial.ac.uk and Christopher Conley cjconley@ucdavis.edu
c02d80efba80 planemo upload commit d8cc436fd91f5748dc396d0527a0a303d3221835
lecorguille
parents:
diff changeset
26
c02d80efba80 planemo upload commit d8cc436fd91f5748dc396d0527a0a303d3221835
lecorguille
parents:
diff changeset
27 .. class:: infomark
c02d80efba80 planemo upload commit d8cc436fd91f5748dc396d0527a0a303d3221835
lecorguille
parents:
diff changeset
28
c02d80efba80 planemo upload commit d8cc436fd91f5748dc396d0527a0a303d3221835
lecorguille
parents:
diff changeset
29 **Galaxy integration** ABiMS TEAM - UPMC/CNRS - Station biologique de Roscoff and Yann Guitton yann.guitton@oniris-nantes.fr - part of Workflow4Metabolomics.org [W4M]
c02d80efba80 planemo upload commit d8cc436fd91f5748dc396d0527a0a303d3221835
lecorguille
parents:
diff changeset
30
c02d80efba80 planemo upload commit d8cc436fd91f5748dc396d0527a0a303d3221835
lecorguille
parents:
diff changeset
31 | Contact support@workflow4metabolomics.org for any questions or concerns about the Galaxy implementation of this tool.
c02d80efba80 planemo upload commit d8cc436fd91f5748dc396d0527a0a303d3221835
lecorguille
parents:
diff changeset
32
c02d80efba80 planemo upload commit d8cc436fd91f5748dc396d0527a0a303d3221835
lecorguille
parents:
diff changeset
33 ---------------------------------------------------
c02d80efba80 planemo upload commit d8cc436fd91f5748dc396d0527a0a303d3221835
lecorguille
parents:
diff changeset
34
c02d80efba80 planemo upload commit d8cc436fd91f5748dc396d0527a0a303d3221835
lecorguille
parents:
diff changeset
35 </token>
c02d80efba80 planemo upload commit d8cc436fd91f5748dc396d0527a0a303d3221835
lecorguille
parents:
diff changeset
36
c02d80efba80 planemo upload commit d8cc436fd91f5748dc396d0527a0a303d3221835
lecorguille
parents:
diff changeset
37
c02d80efba80 planemo upload commit d8cc436fd91f5748dc396d0527a0a303d3221835
lecorguille
parents:
diff changeset
38 <xml name="citation">
c02d80efba80 planemo upload commit d8cc436fd91f5748dc396d0527a0a303d3221835
lecorguille
parents:
diff changeset
39 <citations>
c02d80efba80 planemo upload commit d8cc436fd91f5748dc396d0527a0a303d3221835
lecorguille
parents:
diff changeset
40 <citation type="doi">10.1021/ac202450g</citation>
c02d80efba80 planemo upload commit d8cc436fd91f5748dc396d0527a0a303d3221835
lecorguille
parents:
diff changeset
41 <citation type="doi">10.1093/bioinformatics/btu813</citation>
c02d80efba80 planemo upload commit d8cc436fd91f5748dc396d0527a0a303d3221835
lecorguille
parents:
diff changeset
42 </citations>
c02d80efba80 planemo upload commit d8cc436fd91f5748dc396d0527a0a303d3221835
lecorguille
parents:
diff changeset
43 </xml>
c02d80efba80 planemo upload commit d8cc436fd91f5748dc396d0527a0a303d3221835
lecorguille
parents:
diff changeset
44 </macros>