Mercurial > repos > kpbioteam > minfi_qc

changeset 1:88f94d4c59c4 draft

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planemo upload for repository https://github.com/kpbioteam/minfi_qc commit bb1622e57b83aa260687997e48fc4ec7011f8642
author kpbioteam
date Wed, 23 May 2018 06:36:52 -0400
parents 7bd0d3c7a8d3
children e1623ee43bc6
files README.md minfi_qc.xml test.Rmd
diffstat 3 files changed, 11 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/README.md	Wed May 23 06:36:52 2018 -0400
@@ -0,0 +1,1 @@
+# Estimate sample-specific quality control (QC) for methylation data
--- a/minfi_qc.xml	Tue Feb 06 05:40:33 2018 -0500
+++ b/minfi_qc.xml	Wed May 23 06:36:52 2018 -0400
@@ -7,11 +7,11 @@
         Rscript  ${__tool_directory__}/minfi_qc.R  "$input1" "$output1" "$output2"
     ]]></command>
     <inputs>
-        <param type="data" name="input1" format="rdata" />
+        <param type="data" name="input1" format="rdata" label="Methylation Data"/>
     </inputs>
     <outputs>
-        <data name="output1" format="txt" />
-        <data name="output2" format="png" />
+        <data name="output1" format="txt" label="Quality Control Report"/>
+        <data name="output2" format="png" lable="Quality Control Plot"/>
     </outputs>
     <tests>
         <test>
@@ -26,4 +26,4 @@
     <citations>
         <citation type="doi">10.1093/bioinformatics/btu049</citation>
     </citations>
-</tool>
\ No newline at end of file
+</tool>
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test.Rmd	Wed May 23 06:36:52 2018 -0400
@@ -0,0 +1,6 @@
+---
+title: "An example Knitr/R Markdown document"
+author: "Kpbioteam"
+date: "23 Feb 2018"
+output: html_document
+---