Mercurial > repos > kpbioteam > minfi_qc

annotate minfi_qc.R @ 2:e1623ee43bc6 draft default tip

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planemo upload for repository https://github.com/kpbioteam/minfi_qc commit bb1622e57b83aa260687997e48fc4ec7011f8642-dirty
author kpbioteam
date Wed, 27 Jun 2018 14:23:05 -0400
parents 7bd0d3c7a8d3
children
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1 require("minfi", quietly = TRUE)
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2
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3 args <- commandArgs(trailingOnly = TRUE)
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4
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5 input = args[1]
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6 output1 = args[2]
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7 output2 = args[3]
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8
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9 MSet <- get(load(input))
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10
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11 qc <- getQC(MSet)
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12
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13 write.table(qc, output1)
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14
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15 png(output2)
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16 plotQC(qc)
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17 dev.off()