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planemo upload
author kpbioteam
date Tue, 06 Feb 2018 05:40:33 -0500
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require("minfi", quietly = TRUE)

args <- commandArgs(trailingOnly = TRUE)

input = args[1] 
output1 = args[2]
output2 = args[3]

MSet <- get(load(input))

qc <- getQC(MSet)

write.table(qc, output1)

png(output2)
plotQC(qc)
dev.off()