Mercurial > repos > kpbioteam > minfi_ppnoob

annotate minfi_ppnoob.R @ 0:a003221d59cc draft default tip

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planemo upload for repository https://github.com/kpbioteam/minfi_ppnoob commit 3301cca8b83e0539831cc8639f451e0a58018890-dirty
author kpbioteam
date Sun, 11 Feb 2018 08:28:49 -0500
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a003221d59cc planemo upload for repository https://github.com/kpbioteam/minfi_ppnoob commit 3301cca8b83e0539831cc8639f451e0a58018890-dirty
kpbioteam
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diff changeset
1 require("minfi", quietly = TRUE)
a003221d59cc planemo upload for repository https://github.com/kpbioteam/minfi_ppnoob commit 3301cca8b83e0539831cc8639f451e0a58018890-dirty
kpbioteam
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diff changeset
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a003221d59cc planemo upload for repository https://github.com/kpbioteam/minfi_ppnoob commit 3301cca8b83e0539831cc8639f451e0a58018890-dirty
kpbioteam
parents:
diff changeset
3 args <- commandArgs(trailingOnly = TRUE)
a003221d59cc planemo upload for repository https://github.com/kpbioteam/minfi_ppnoob commit 3301cca8b83e0539831cc8639f451e0a58018890-dirty
kpbioteam
parents:
diff changeset
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a003221d59cc planemo upload for repository https://github.com/kpbioteam/minfi_ppnoob commit 3301cca8b83e0539831cc8639f451e0a58018890-dirty
kpbioteam
parents:
diff changeset
5 input = args[1]
a003221d59cc planemo upload for repository https://github.com/kpbioteam/minfi_ppnoob commit 3301cca8b83e0539831cc8639f451e0a58018890-dirty
kpbioteam
parents:
diff changeset
6 output = args[2]
a003221d59cc planemo upload for repository https://github.com/kpbioteam/minfi_ppnoob commit 3301cca8b83e0539831cc8639f451e0a58018890-dirty
kpbioteam
parents:
diff changeset
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a003221d59cc planemo upload for repository https://github.com/kpbioteam/minfi_ppnoob commit 3301cca8b83e0539831cc8639f451e0a58018890-dirty
kpbioteam
parents:
diff changeset
8 RGSet <- get(load(input))
a003221d59cc planemo upload for repository https://github.com/kpbioteam/minfi_ppnoob commit 3301cca8b83e0539831cc8639f451e0a58018890-dirty
kpbioteam
parents:
diff changeset
9
a003221d59cc planemo upload for repository https://github.com/kpbioteam/minfi_ppnoob commit 3301cca8b83e0539831cc8639f451e0a58018890-dirty
kpbioteam
parents:
diff changeset
10 MSet <- preprocessNoob(RGSet)
a003221d59cc planemo upload for repository https://github.com/kpbioteam/minfi_ppnoob commit 3301cca8b83e0539831cc8639f451e0a58018890-dirty
kpbioteam
parents:
diff changeset
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a003221d59cc planemo upload for repository https://github.com/kpbioteam/minfi_ppnoob commit 3301cca8b83e0539831cc8639f451e0a58018890-dirty
kpbioteam
parents:
diff changeset
12 save(MSet,file = output)