Mercurial > repos > kpbioteam > minfi_ppnoob

diff minfi_ppnoob.R @ 0:a003221d59cc draft default tip

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planemo upload for repository https://github.com/kpbioteam/minfi_ppnoob commit 3301cca8b83e0539831cc8639f451e0a58018890-dirty
author kpbioteam
date Sun, 11 Feb 2018 08:28:49 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/minfi_ppnoob.R	Sun Feb 11 08:28:49 2018 -0500
@@ -0,0 +1,12 @@
+require("minfi", quietly = TRUE)
+
+args <- commandArgs(trailingOnly = TRUE)
+
+input = args[1]
+output = args[2]
+
+RGSet <- get(load(input))
+
+MSet <- preprocessNoob(RGSet)
+
+save(MSet,file = output)