annotate minfi_getbeta.R @ 1:8bc3e950468b draft

planemo upload commit 44d44bee0ad74081921d6c3e74a6231ed3e9c125
author kpbioteam
date Tue, 29 May 2018 10:06:53 -0400
parents ab291e211089
children 4953a5a6c006
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
ab291e211089 planemo upload
kpbioteam
parents:
diff changeset
1 require("minfi", quietly = TRUE)
ab291e211089 planemo upload
kpbioteam
parents:
diff changeset
2
ab291e211089 planemo upload
kpbioteam
parents:
diff changeset
3 args <- commandArgs(trailingOnly = TRUE)
ab291e211089 planemo upload
kpbioteam
parents:
diff changeset
4
ab291e211089 planemo upload
kpbioteam
parents:
diff changeset
5 input = args[1]
ab291e211089 planemo upload
kpbioteam
parents:
diff changeset
6 output = args[2]
ab291e211089 planemo upload
kpbioteam
parents:
diff changeset
7
ab291e211089 planemo upload
kpbioteam
parents:
diff changeset
8 RSet <- get(load(input))
ab291e211089 planemo upload
kpbioteam
parents:
diff changeset
9
ab291e211089 planemo upload
kpbioteam
parents:
diff changeset
10 beta <- getBeta(RSet)
ab291e211089 planemo upload
kpbioteam
parents:
diff changeset
11
ab291e211089 planemo upload
kpbioteam
parents:
diff changeset
12 write.table(beta, output)