Mercurial > repos > kpbioteam > minfi_dmr

changeset 20:3d15f8823c98 draft

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planemo upload for repository https://github.com/kpbioteam/minfi_dmr commit 65d01f00526cadfcd1f52d06243fbc87ffee462f-dirty
author kpbioteam
date Tue, 12 Jun 2018 12:10:56 -0400
parents 0fae75cb6146
children a9bdbb071346
files minfi_dmr.xml
diffstat 1 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/minfi_dmr.xml	Tue Jun 12 12:02:18 2018 -0400
+++ b/minfi_dmr.xml	Tue Jun 12 12:10:56 2018 -0400
@@ -2,7 +2,6 @@
     <description>to find differentially methylated regions</description>
     <requirements>
         <requirement type="package" version="1.24.0">bioconductor-minfi</requirement>
-    <requirement type="package" version="1.38.3">bioconductor-rtracklayer</requirement>
 </requirements>
     <command detect_errors="exit_code"><![CDATA[
         Rscript  ${__tool_directory__}/minfi_dmr.R "$input1" "$input2" "$input3" "$input4" "$input5" "$input6" "$input7" "$input8" "$input9""$input10" "$output1"
@@ -24,7 +23,7 @@
                         <option value="TRUE">TRUE</option>
                         <option value="FALSE">FALSE</option>
                     </param>
-     <param name="input10" type="text" value="0.2" label="Set up difference for an annotation hypo- or hyper- methylation"/>
+     <param name="input10" type="text" value="0.2" label="Set up Difference" help="Set up difference for an annotation hypo- or hyper- methylation"/>
  </inputs>
     <outputs>
         <data name="output1" format="bed" label="Differentially Methylated Regions" /> 
@@ -40,6 +39,7 @@
             <param name="input7" value="0.02"/>
             <param name="input8" value="permutation"/>
             <param name="input9" value="FALSE"/>
+            <param name="input10" value="0.2"/>
             <output name="output1" file="dmr.bed"/>
         </test>
     </tests>