Mercurial > repos > kpbioteam > chipseeker_test2

view ChIPseeker_test2.xml @ 1:43bd1a949ee2 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/kpbioteam/ChIPseeker_test2
author kpbioteam
date Mon, 09 Apr 2018 07:11:40 -0400
parents c1eac77337ae
children
line wrap: on
line source

<tool id="ChIPseeker_test2" name="ChIPseeker_test2" version="0.1.0">
    <description>chipseeker for mm9</description>
    <requirements>
        <requirement type="package" version="1.14.0">bioconductor-chipseeker</requirement>
        <requirement type="package" version="3.2.2">bioconductor-txdb.mmusculus.ucsc.mm9.knowngene</requirement>
        <requirement type="package" version="3.5.0">bioconductor-org.mm.eg.db</requirement>
    </requirements>
    <command detect_errors="exit_code"><![CDATA[
        Rscript  ${__tool_directory__}/ChIPseeker_test2.R  "$input1"  "$output1"  "$output2"
    ]]></command>
    <inputs>
        <param type="data" name="input1" format="bed" />
    </inputs>
    <outputs>
        <data name="output1" format="txt" />
        <data name="output2" format="pdf" />
    </outputs>
    <tests>
        <test>
            <param name="input1" value="ex.bed"/>
            <output name="output1" file="o1.txt"/>
            <output name="output2" file="o2.pdf"/>
        </test>
    </tests>
    <help><![CDATA[
        chipseeker for mm9 
    ]]></help>
    <citations>
        <citation type="doi">110.18129/B9.bioc.ChIPseeker</citation>
    </citations>
</tool>