Mercurial > repos > kpbioteam > chipeakanno_annopeaks
changeset 1:a90b6d85463c draft
planemo upload for repository https://github.com/kpbioteam/chipeakanno_annopeaks commit b7298370ebae64340e792262c4e4f35568757871-dirty
| author | kpbioteam |
|---|---|
| date | Wed, 02 May 2018 10:23:51 -0400 |
| parents | efd9e1315ed5 |
| children | ad60ed89de63 |
| files | annoTab.txt chipeakanno_annopeaks.R chipeakanno_annopeaks.xml peaks.rdata test-data/annoTab.txt test-data/dmr.bed test-data/peaks.rdata |
| diffstat | 7 files changed, 43088 insertions(+), 26365 deletions(-) [+] |
line wrap: on
line diff
--- a/annoTab.txt Wed May 02 09:24:03 2018 -0400 +++ b/annoTab.txt Wed May 02 10:23:51 2018 -0400 @@ -1,13181 +1,13181 @@ -"seqnames" "start" "end" "width" "strand" "value_pos" "peak" "feature" "feature.ranges.start" "feature.ranges.end" "feature.ranges.width" "feature.strand" "distance" "insideFeature" "distanceToSite" "gene_name" -"chrX" 68047520 68049085 1566 "*" 0.521502742570152 "X1" "ENSG00000090776" 68048840 68061990 13151 "+" 0 "overlapStart" 0 "EFNB1" -"chrX" 48754982 48755797 816 "*" 0.519942832634712 "X2" "ENSG00000102103" 48755195 48760420 5226 "+" 0 "overlapStart" 0 "PQBP1" -"chrX" 48754982 48755797 816 "*" 0.519942832634712 "X2" "ENSG00000126768" 48750730 48755426 4697 "-" 0 "overlapStart" 0 "TIMM17B" -"chrX" 47004051 47005131 1081 "*" 0.516942750030124 "X3" "ENSG00000182872" 47004268 47046212 41945 "+" 0 "overlapStart" 0 "RBM10" -"chrX" 47004051 47005131 1081 "*" 0.516942750030124 "X3" "ENSG00000147123" 47001615 47004903 3289 "-" 0 "overlapStart" 0 "NDUFB11" -"chrX" 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149605515 149605515 1 "*" 0.53543929740979 "X14435" "ENSG00000232151" 149605640 149633208 27569 "+" 124 "upstream" 124 "RP11-353N4.8" -"chr1" 149605515 149605515 1 "*" 0.53543929740979 "X14435" "ENSG00000202496" 149605917 149606079 163 "+" 401 "upstream" 401 "RNVU1-20" -"chrX" 71131060 71131060 1 "*" 0.535391637350984 "X14437" "ENSG00000204131" 71130938 71363424 232487 "+" 0 "inside" 121 "NHSL2" -"chrX" 153608357 153608357 1 "*" 0.535384481979854 "X14438" "ENSG00000102119" 153607557 153609883 2327 "+" 0 "inside" 799 "EMD" -"chr1" 38229476 38229476 1 "*" 0.535353766242234 "X14440" "ENSG00000183317" 38179552 38230805 51254 "-" 0 "inside" 1328 "EPHA10" -"chrX" 50214878 50214878 1 "*" 0.535334326881988 "X14441" "ENSG00000204466" 50108408 50213737 105330 "-" 1140 "upstream" 1140 "DGKK" -"chrX" 49020468 49020468 1 "*" 0.535300465752218 "X14443" "ENSG00000017621" 49019061 49024822 5762 "+" 0 "inside" 1406 "MAGIX" -"chrX" 129040950 129040950 1 "*" 0.535286495453083 "X14444" "ENSG00000156697" 129040097 129063737 23641 "+" 0 "inside" 852 "UTP14A" -"chr1" 155177783 155177783 1 "*" 0.535242387216659 "X14445" "ENSG00000173171" 155178490 155183615 5126 "+" 706 "upstream" 706 "MTX1" -"chr1" 155177783 155177783 1 "*" 0.535242387216659 "X14445" "ENSG00000169231" 155165379 155178842 13464 "-" 0 "inside" 1058 "THBS3" -"chr1" 228350860 228350860 1 "*" 0.535161131544953 "X14446" "ENSG00000181873" 228353516 228369958 16443 "+" 2655 "upstream" 2655 "IBA57" -"chrX" 150152212 150152212 1 "*" 0.535082285635166 "X14448" "ENSG00000029993" 150148982 150159248 10267 "+" 0 "inside" 3229 "HMGB3" -"chr1" 201858339 201858339 1 "*" 0.535056367279862 "X14450" "ENSG00000198892" 201857808 201861434 3627 "+" 0 "inside" 530 "SHISA4" -"chr1" 201858339 201858339 1 "*" 0.535056367279862 "X14450" "ENSG00000223774" 201862970 201869106 6137 "+" 4630 "upstream" 4630 "RP11-307B6.3" -"chr1" 184355420 184355420 1 "*" 0.534992722928529 "X14453" "ENSG00000116667" 184356192 184598154 241963 "+" 771 "upstream" 771 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"NES" -"chr1" 226271762 226271762 1 "*" 0.534556708722904 "X14472" "ENSG00000225518" 226271340 226277993 6654 "+" 0 "inside" 421 "RP11-396C23.2" -"chr1" 26758228 26758228 1 "*" 0.534523043489757 "X14474" "ENSG00000117682" 26758773 26797785 39013 "+" 544 "upstream" 544 "DHDDS" -"chr1" 1309641 1309641 1 "*" 0.534482094225438 "X14475" "ENSG00000223663" 1314046 1314412 367 "+" 4404 "upstream" 4404 "RP5-890O3.3" -"chr1" 1309641 1309641 1 "*" 0.534482094225438 "X14475" "ENSG00000175756" 1309110 1310875 1766 "-" 0 "inside" 1233 "AURKAIP1" -"chr1" 247275489 247275489 1 "*" 0.534478569611657 "X14476" "ENSG00000221953" 247273462 247275719 2258 "-" 0 "inside" 229 "C1orf229" -"chrX" 8698228 8698228 1 "*" 0.534333863283872 "X14477" "ENSG00000011201" 8496915 8700227 203313 "-" 0 "inside" 1998 "KAL1" -"chr1" 47903450 47903450 1 "*" 0.534296083345824 "X14479" "ENSG00000186564" 47901689 47906363 4675 "+" 0 "inside" 1760 "FOXD2" -"chr1" 47903450 47903450 1 "*" 0.534296083345824 "X14479" 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53078631 1 "*" 0.532839767353805 "X14521" "ENSG00000184194" 53078273 53109797 31525 "+" 0 "inside" 357 "GPR173" -"chr1" 205424972 205424972 1 "*" 0.532807833183104 "X14522" "ENSG00000224717" 205425057 205438152 13096 "+" 84 "upstream" 84 "RP11-576D8.4" -"chr1" 205424972 205424972 1 "*" 0.532807833183104 "X14522" "ENSG00000186007" 205350506 205425082 74577 "-" 0 "inside" 109 "LEMD1" -"chrX" 17395220 17395220 1 "*" 0.532739972707777 "X14523" "ENSG00000188158" 17393543 17754114 360572 "+" 0 "inside" 1676 "NHS" -"chrX" 47225852 47225852 1 "*" 0.532611780012429 "X14526" "ENSG00000147117" 47229982 47273704 43723 "+" 4129 "upstream" 4129 "ZNF157" -"chrX" 69672831 69672831 1 "*" 0.532591018132932 "X14527" "ENSG00000231651" 69672808 69675844 3037 "-" 0 "inside" 3012 "DLG3-AS1" -"chrX" 150859549 150859549 1 "*" 0.53258668401206 "X14528" "ENSG00000130032" 150863596 150874396 10801 "+" 4046 "upstream" 4046 "PRRG3" -"chr1" 50892794 50892794 1 "*" 0.532548620701096 "X14529" "ENSG00000142700" 50883222 50889172 5951 "-" 3621 "upstream" 3621 "DMRTA2" -"chr1" 170633508 170633508 1 "*" 0.532518508690726 "X14530" "ENSG00000116132" 170631869 170708560 76692 "+" 0 "inside" 1638 "PRRX1" -"chr1" 170633508 170633508 1 "*" 0.532518508690726 "X14530" "ENSG00000271811" 170636522 170638566 2045 "+" 3013 "upstream" 3013 "RP1-79C4.4" -"chr1" 153651568 153651568 1 "*" 0.532498255518684 "X14531" "ENSG00000169418" 153651113 153666468 15356 "+" 0 "inside" 454 "NPR1" -"chr1" 91184290 91184290 1 "*" 0.532415236043025 "X14533" "ENSG00000143032" 91177096 91182794 5699 "-" 1495 "upstream" 1495 "BARHL2" -"chr1" 112282986 112282986 1 "*" 0.532409225773117 "X14534" "ENSG00000227811" 112282463 112290420 7958 "+" 0 "inside" 522 "FAM212B-AS1" -"chrX" 28604661 28604661 1 "*" 0.532301846059295 "X14536" "ENSG00000223742" 28589649 28604512 14864 "-" 148 "upstream" 148 "RP11-149B9.2" -"chrX" 28604661 28604661 1 "*" 0.532301846059295 "X14536" "ENSG00000169306" 28605516 29974840 1369325 "+" 854 "upstream" 854 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"X14577" "ENSG00000241859" 15863536 16027704 164169 "+" 0 "inside" 364 "KALP" -"chr1" 110691765 110691765 1 "*" 0.530939711802578 "X14579" "ENSG00000197106" 110693108 110744824 51717 "+" 1342 "upstream" 1342 "SLC6A17" -"chr1" 153113262 153113262 1 "*" 0.530845626464688 "X14582" "ENSG00000196805" 153042700 153113927 71228 "-" 0 "inside" 664 "SPRR2B" -"chr1" 153113262 153113262 1 "*" 0.530845626464688 "X14582" "ENSG00000229035" 153112967 153113185 219 "-" 76 "upstream" 76 "SPRR2C" -"chrX" 30327110 30327110 1 "*" 0.53075227491196 "X14583" "ENSG00000169297" 30322323 30327715 5393 "-" 0 "inside" 604 "NR0B1" -"chrX" 73513143 73513143 1 "*" 0.53067797804274 "X14585" "ENSG00000230590" 73183790 73513409 329620 "-" 0 "inside" 265 "FTX" -"chrX" 17878442 17878442 1 "*" 0.530654598104855 "X14587" "ENSG00000131831" 17818169 17879457 61289 "-" 0 "inside" 1014 "RAI2" -"chrX" 131158005 131158005 1 "*" 0.530637405600032 "X14588" "ENSG00000134602" 131157293 131209971 52679 "+" 0 "inside" 711 "MST4" 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"-" 0 "inside" 3205 "YOD1" -"chr1" 149784851 149784851 1 "*" 0.529615733111168 "X14626" "ENSG00000242663" 149754433 149783312 28880 "-" 1538 "upstream" 1538 "RP11-196G18.21" -"chr1" 149784851 149784851 1 "*" 0.529615733111168 "X14626" "ENSG00000203814" 149754245 149783928 29684 "-" 922 "upstream" 922 "HIST2H2BF" -"chr1" 149784851 149784851 1 "*" 0.529615733111168 "X14626" "ENSG00000183598" 149784826 149785236 411 "-" 0 "inside" 384 "HIST2H3D" -"chrX" 48775820 48775820 1 "*" 0.529564592810506 "X14627" "ENSG00000102096" 48770459 48776301 5843 "-" 0 "inside" 480 "PIM2" -"chr1" 209849185 209849185 1 "*" 0.529550992893968 "X14628" "ENSG00000123689" 209848765 209849733 969 "+" 0 "inside" 419 "G0S2" -"chrX" 102942485 102942485 1 "*" 0.529542540340421 "X14629" "ENSG00000231154" 102942212 102946700 4489 "+" 0 "inside" 272 "MORF4L2-AS1" -"chrX" 102942485 102942485 1 "*" 0.529542540340421 "X14629" "ENSG00000123562" 102930424 102943086 12663 "-" 0 "inside" 600 "MORF4L2" -"chr1" 34633066 34633066 1 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203595689 203713209 117521 "+" 0 "inside" 2883 "ATP2B4" -"chrX" 129116224 129116224 1 "*" 0.529291082043288 "X14638" "ENSG00000085185" 129115083 129192058 76976 "+" 0 "inside" 1140 "BCORL1" -"chrX" 21392988 21392988 1 "*" 0.529247346797919 "X14639" "ENSG00000149970" 21392536 21672813 280278 "+" 0 "inside" 451 "CNKSR2" -"chr1" 152955543 152955543 1 "*" 0.529234331632172 "X14640" "ENSG00000169474" 152956557 152958289 1733 "+" 1013 "upstream" 1013 "SPRR1A" -"chr1" 159507078 159507078 1 "*" 0.529212625361316 "X14642" "ENSG00000184155" 159504793 159505842 1050 "-" 1235 "upstream" 1235 "OR10J5" -"chr1" 33367401 33367401 1 "*" 0.529207411168857 "X14643" "ENSG00000121900" 33360195 33367039 6845 "-" 361 "upstream" 361 "TMEM54" -"chrX" 45710419 45710419 1 "*" 0.529196366027041 "X14644" "ENSG00000231566" 45707328 45710920 3593 "-" 0 "inside" 500 "RP5-1158E12.3" -"chr1" 156674970 156674970 1 "*" 0.529112020811309 "X14645" "ENSG00000143320" 156669398 156675608 6211 "-" 0 "inside" 637 "CRABP2" 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215 "DENND4B" -"chr1" 27321145 27321145 1 "*" 0.500660088834433 "X16209" "ENSG00000253368" 27320198 27327389 7192 "+" 0 "inside" 946 "TRNP1" -"chr1" 112531938 112531938 1 "*" 0.500655931962574 "X16210" "ENSG00000171385" 112313284 112531777 218494 "-" 160 "upstream" 160 "KCND3" -"chr1" 112531938 112531938 1 "*" 0.500655931962574 "X16210" "LRG_445" 112318454 112531777 213324 "-" 160 "upstream" 160 "LRG_445" -"chr1" 112531938 112531938 1 "*" 0.500655931962574 "X16210" "ENSG00000231437" 112532392 112541464 9073 "+" 453 "upstream" 453 "RP11-88H9.2" -"chr1" 230778078 230778078 1 "*" 0.500651840442817 "X16211" "ENSG00000135775" 230778235 230829728 51494 "+" 156 "upstream" 156 "COG2" -"chr1" 185014370 185014370 1 "*" 0.50063536190094 "X16214" "ENSG00000121481" 185014496 185071740 57245 "+" 125 "upstream" 125 "RNF2" -"chr1" 166136551 166136551 1 "*" 0.500634849952374 "X16215" "ENSG00000230898" 166117019 166134332 17314 "-" 2218 "upstream" 2218 "RP11-9L18.3" -"chr1" 166136551 166136551 1 "*" 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--- a/chipeakanno_annopeaks.R Wed May 02 09:24:03 2018 -0400 +++ b/chipeakanno_annopeaks.R Wed May 02 10:23:51 2018 -0400 @@ -13,7 +13,10 @@ input4 = as.numeric(args[4]) output1 = args[5] -peaks <- get(load(input1)) +DMRInfo <- read.table(input1) +peaks <- GRanges(seqnames = DMRInfo[, 1], + ranges = IRanges + (start = DMRInfo[, 2], end = DMRInfo[, 3])) annoData <- toGRanges(EnsDb.Hsapiens.v75) seqlevelsStyle(peaks) <- seqlevelsStyle(annoData)
--- a/chipeakanno_annopeaks.xml Wed May 02 09:24:03 2018 -0400 +++ b/chipeakanno_annopeaks.xml Wed May 02 10:23:51 2018 -0400 @@ -9,7 +9,7 @@ Rscript ${__tool_directory__}/chipeakanno_annopeaks.R "$input1" "$input2" "$input3" "$input4" "$output1" ]]></command> <inputs> - <param type="data" name="input1" format="rdata" /> + <param type="data" name="input1" format="bed"/> <param name="input2" type="select" label="bindingType" help="Specifying the criteria to associate peaks with annotation e.g. startSite start position of the feature strand"> <option value="startSite">startSite</option> <option value="endSite">endSite</option> @@ -24,7 +24,7 @@ </outputs> <tests> <test> - <param name="input1" value="peaks.rdata"/> + <param name="input1" value="dmr.bed"/> <param name="input2" value="startSite"/> <param name="input3" value="-5000"/> <param name="input4" value="5000"/>
--- a/test-data/annoTab.txt Wed May 02 09:24:03 2018 -0400 +++ b/test-data/annoTab.txt Wed May 02 10:23:51 2018 -0400 @@ -1,13181 +1,13181 @@ -"seqnames" "start" "end" "width" "strand" "value_pos" "peak" "feature" "feature.ranges.start" "feature.ranges.end" "feature.ranges.width" "feature.strand" "distance" "insideFeature" "distanceToSite" "gene_name" -"chrX" 68047520 68049085 1566 "*" 0.521502742570152 "X1" "ENSG00000090776" 68048840 68061990 13151 "+" 0 "overlapStart" 0 "EFNB1" -"chrX" 48754982 48755797 816 "*" 0.519942832634712 "X2" "ENSG00000102103" 48755195 48760420 5226 "+" 0 "overlapStart" 0 "PQBP1" -"chrX" 48754982 48755797 816 "*" 0.519942832634712 "X2" "ENSG00000126768" 48750730 48755426 4697 "-" 0 "overlapStart" 0 "TIMM17B" -"chrX" 47004051 47005131 1081 "*" 0.516942750030124 "X3" "ENSG00000182872" 47004268 47046212 41945 "+" 0 "overlapStart" 0 "RBM10" -"chrX" 47004051 47005131 1081 "*" 0.516942750030124 "X3" "ENSG00000147123" 47001615 47004903 3289 "-" 0 "overlapStart" 0 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149605515 149605515 1 "*" 0.53543929740979 "X14435" "ENSG00000232151" 149605640 149633208 27569 "+" 124 "upstream" 124 "RP11-353N4.8" -"chr1" 149605515 149605515 1 "*" 0.53543929740979 "X14435" "ENSG00000202496" 149605917 149606079 163 "+" 401 "upstream" 401 "RNVU1-20" -"chrX" 71131060 71131060 1 "*" 0.535391637350984 "X14437" "ENSG00000204131" 71130938 71363424 232487 "+" 0 "inside" 121 "NHSL2" -"chrX" 153608357 153608357 1 "*" 0.535384481979854 "X14438" "ENSG00000102119" 153607557 153609883 2327 "+" 0 "inside" 799 "EMD" -"chr1" 38229476 38229476 1 "*" 0.535353766242234 "X14440" "ENSG00000183317" 38179552 38230805 51254 "-" 0 "inside" 1328 "EPHA10" -"chrX" 50214878 50214878 1 "*" 0.535334326881988 "X14441" "ENSG00000204466" 50108408 50213737 105330 "-" 1140 "upstream" 1140 "DGKK" -"chrX" 49020468 49020468 1 "*" 0.535300465752218 "X14443" "ENSG00000017621" 49019061 49024822 5762 "+" 0 "inside" 1406 "MAGIX" -"chrX" 129040950 129040950 1 "*" 0.535286495453083 "X14444" "ENSG00000156697" 129040097 129063737 23641 "+" 0 "inside" 852 "UTP14A" -"chr1" 155177783 155177783 1 "*" 0.535242387216659 "X14445" "ENSG00000173171" 155178490 155183615 5126 "+" 706 "upstream" 706 "MTX1" -"chr1" 155177783 155177783 1 "*" 0.535242387216659 "X14445" "ENSG00000169231" 155165379 155178842 13464 "-" 0 "inside" 1058 "THBS3" -"chr1" 228350860 228350860 1 "*" 0.535161131544953 "X14446" "ENSG00000181873" 228353516 228369958 16443 "+" 2655 "upstream" 2655 "IBA57" -"chrX" 150152212 150152212 1 "*" 0.535082285635166 "X14448" "ENSG00000029993" 150148982 150159248 10267 "+" 0 "inside" 3229 "HMGB3" -"chr1" 201858339 201858339 1 "*" 0.535056367279862 "X14450" "ENSG00000198892" 201857808 201861434 3627 "+" 0 "inside" 530 "SHISA4" -"chr1" 201858339 201858339 1 "*" 0.535056367279862 "X14450" "ENSG00000223774" 201862970 201869106 6137 "+" 4630 "upstream" 4630 "RP11-307B6.3" -"chr1" 184355420 184355420 1 "*" 0.534992722928529 "X14453" "ENSG00000116667" 184356192 184598154 241963 "+" 771 "upstream" 771 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"NES" -"chr1" 226271762 226271762 1 "*" 0.534556708722904 "X14472" "ENSG00000225518" 226271340 226277993 6654 "+" 0 "inside" 421 "RP11-396C23.2" -"chr1" 26758228 26758228 1 "*" 0.534523043489757 "X14474" "ENSG00000117682" 26758773 26797785 39013 "+" 544 "upstream" 544 "DHDDS" -"chr1" 1309641 1309641 1 "*" 0.534482094225438 "X14475" "ENSG00000223663" 1314046 1314412 367 "+" 4404 "upstream" 4404 "RP5-890O3.3" -"chr1" 1309641 1309641 1 "*" 0.534482094225438 "X14475" "ENSG00000175756" 1309110 1310875 1766 "-" 0 "inside" 1233 "AURKAIP1" -"chr1" 247275489 247275489 1 "*" 0.534478569611657 "X14476" "ENSG00000221953" 247273462 247275719 2258 "-" 0 "inside" 229 "C1orf229" -"chrX" 8698228 8698228 1 "*" 0.534333863283872 "X14477" "ENSG00000011201" 8496915 8700227 203313 "-" 0 "inside" 1998 "KAL1" -"chr1" 47903450 47903450 1 "*" 0.534296083345824 "X14479" "ENSG00000186564" 47901689 47906363 4675 "+" 0 "inside" 1760 "FOXD2" -"chr1" 47903450 47903450 1 "*" 0.534296083345824 "X14479" 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53078631 1 "*" 0.532839767353805 "X14521" "ENSG00000184194" 53078273 53109797 31525 "+" 0 "inside" 357 "GPR173" -"chr1" 205424972 205424972 1 "*" 0.532807833183104 "X14522" "ENSG00000224717" 205425057 205438152 13096 "+" 84 "upstream" 84 "RP11-576D8.4" -"chr1" 205424972 205424972 1 "*" 0.532807833183104 "X14522" "ENSG00000186007" 205350506 205425082 74577 "-" 0 "inside" 109 "LEMD1" -"chrX" 17395220 17395220 1 "*" 0.532739972707777 "X14523" "ENSG00000188158" 17393543 17754114 360572 "+" 0 "inside" 1676 "NHS" -"chrX" 47225852 47225852 1 "*" 0.532611780012429 "X14526" "ENSG00000147117" 47229982 47273704 43723 "+" 4129 "upstream" 4129 "ZNF157" -"chrX" 69672831 69672831 1 "*" 0.532591018132932 "X14527" "ENSG00000231651" 69672808 69675844 3037 "-" 0 "inside" 3012 "DLG3-AS1" -"chrX" 150859549 150859549 1 "*" 0.53258668401206 "X14528" "ENSG00000130032" 150863596 150874396 10801 "+" 4046 "upstream" 4046 "PRRG3" -"chr1" 50892794 50892794 1 "*" 0.532548620701096 "X14529" "ENSG00000142700" 50883222 50889172 5951 "-" 3621 "upstream" 3621 "DMRTA2" -"chr1" 170633508 170633508 1 "*" 0.532518508690726 "X14530" "ENSG00000116132" 170631869 170708560 76692 "+" 0 "inside" 1638 "PRRX1" -"chr1" 170633508 170633508 1 "*" 0.532518508690726 "X14530" "ENSG00000271811" 170636522 170638566 2045 "+" 3013 "upstream" 3013 "RP1-79C4.4" -"chr1" 153651568 153651568 1 "*" 0.532498255518684 "X14531" "ENSG00000169418" 153651113 153666468 15356 "+" 0 "inside" 454 "NPR1" -"chr1" 91184290 91184290 1 "*" 0.532415236043025 "X14533" "ENSG00000143032" 91177096 91182794 5699 "-" 1495 "upstream" 1495 "BARHL2" -"chr1" 112282986 112282986 1 "*" 0.532409225773117 "X14534" "ENSG00000227811" 112282463 112290420 7958 "+" 0 "inside" 522 "FAM212B-AS1" -"chrX" 28604661 28604661 1 "*" 0.532301846059295 "X14536" "ENSG00000223742" 28589649 28604512 14864 "-" 148 "upstream" 148 "RP11-149B9.2" -"chrX" 28604661 28604661 1 "*" 0.532301846059295 "X14536" "ENSG00000169306" 28605516 29974840 1369325 "+" 854 "upstream" 854 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"X14577" "ENSG00000241859" 15863536 16027704 164169 "+" 0 "inside" 364 "KALP" -"chr1" 110691765 110691765 1 "*" 0.530939711802578 "X14579" "ENSG00000197106" 110693108 110744824 51717 "+" 1342 "upstream" 1342 "SLC6A17" -"chr1" 153113262 153113262 1 "*" 0.530845626464688 "X14582" "ENSG00000196805" 153042700 153113927 71228 "-" 0 "inside" 664 "SPRR2B" -"chr1" 153113262 153113262 1 "*" 0.530845626464688 "X14582" "ENSG00000229035" 153112967 153113185 219 "-" 76 "upstream" 76 "SPRR2C" -"chrX" 30327110 30327110 1 "*" 0.53075227491196 "X14583" "ENSG00000169297" 30322323 30327715 5393 "-" 0 "inside" 604 "NR0B1" -"chrX" 73513143 73513143 1 "*" 0.53067797804274 "X14585" "ENSG00000230590" 73183790 73513409 329620 "-" 0 "inside" 265 "FTX" -"chrX" 17878442 17878442 1 "*" 0.530654598104855 "X14587" "ENSG00000131831" 17818169 17879457 61289 "-" 0 "inside" 1014 "RAI2" -"chrX" 131158005 131158005 1 "*" 0.530637405600032 "X14588" "ENSG00000134602" 131157293 131209971 52679 "+" 0 "inside" 711 "MST4" 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"-" 0 "inside" 3205 "YOD1" -"chr1" 149784851 149784851 1 "*" 0.529615733111168 "X14626" "ENSG00000242663" 149754433 149783312 28880 "-" 1538 "upstream" 1538 "RP11-196G18.21" -"chr1" 149784851 149784851 1 "*" 0.529615733111168 "X14626" "ENSG00000203814" 149754245 149783928 29684 "-" 922 "upstream" 922 "HIST2H2BF" -"chr1" 149784851 149784851 1 "*" 0.529615733111168 "X14626" "ENSG00000183598" 149784826 149785236 411 "-" 0 "inside" 384 "HIST2H3D" -"chrX" 48775820 48775820 1 "*" 0.529564592810506 "X14627" "ENSG00000102096" 48770459 48776301 5843 "-" 0 "inside" 480 "PIM2" -"chr1" 209849185 209849185 1 "*" 0.529550992893968 "X14628" "ENSG00000123689" 209848765 209849733 969 "+" 0 "inside" 419 "G0S2" -"chrX" 102942485 102942485 1 "*" 0.529542540340421 "X14629" "ENSG00000231154" 102942212 102946700 4489 "+" 0 "inside" 272 "MORF4L2-AS1" -"chrX" 102942485 102942485 1 "*" 0.529542540340421 "X14629" "ENSG00000123562" 102930424 102943086 12663 "-" 0 "inside" 600 "MORF4L2" -"chr1" 34633066 34633066 1 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203595689 203713209 117521 "+" 0 "inside" 2883 "ATP2B4" -"chrX" 129116224 129116224 1 "*" 0.529291082043288 "X14638" "ENSG00000085185" 129115083 129192058 76976 "+" 0 "inside" 1140 "BCORL1" -"chrX" 21392988 21392988 1 "*" 0.529247346797919 "X14639" "ENSG00000149970" 21392536 21672813 280278 "+" 0 "inside" 451 "CNKSR2" -"chr1" 152955543 152955543 1 "*" 0.529234331632172 "X14640" "ENSG00000169474" 152956557 152958289 1733 "+" 1013 "upstream" 1013 "SPRR1A" -"chr1" 159507078 159507078 1 "*" 0.529212625361316 "X14642" "ENSG00000184155" 159504793 159505842 1050 "-" 1235 "upstream" 1235 "OR10J5" -"chr1" 33367401 33367401 1 "*" 0.529207411168857 "X14643" "ENSG00000121900" 33360195 33367039 6845 "-" 361 "upstream" 361 "TMEM54" -"chrX" 45710419 45710419 1 "*" 0.529196366027041 "X14644" "ENSG00000231566" 45707328 45710920 3593 "-" 0 "inside" 500 "RP5-1158E12.3" -"chr1" 156674970 156674970 1 "*" 0.529112020811309 "X14645" "ENSG00000143320" 156669398 156675608 6211 "-" 0 "inside" 637 "CRABP2" 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215 "DENND4B" -"chr1" 27321145 27321145 1 "*" 0.500660088834433 "X16209" "ENSG00000253368" 27320198 27327389 7192 "+" 0 "inside" 946 "TRNP1" -"chr1" 112531938 112531938 1 "*" 0.500655931962574 "X16210" "ENSG00000171385" 112313284 112531777 218494 "-" 160 "upstream" 160 "KCND3" -"chr1" 112531938 112531938 1 "*" 0.500655931962574 "X16210" "LRG_445" 112318454 112531777 213324 "-" 160 "upstream" 160 "LRG_445" -"chr1" 112531938 112531938 1 "*" 0.500655931962574 "X16210" "ENSG00000231437" 112532392 112541464 9073 "+" 453 "upstream" 453 "RP11-88H9.2" -"chr1" 230778078 230778078 1 "*" 0.500651840442817 "X16211" "ENSG00000135775" 230778235 230829728 51494 "+" 156 "upstream" 156 "COG2" -"chr1" 185014370 185014370 1 "*" 0.50063536190094 "X16214" "ENSG00000121481" 185014496 185071740 57245 "+" 125 "upstream" 125 "RNF2" -"chr1" 166136551 166136551 1 "*" 0.500634849952374 "X16215" "ENSG00000230898" 166117019 166134332 17314 "-" 2218 "upstream" 2218 "RP11-9L18.3" -"chr1" 166136551 166136551 1 "*" 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