view somewrapper.xml @ 0:959a0e30d6c1 draft default tip

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author kevyin
date Sat, 19 Jan 2013 21:51:49 -0500
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<tool id="some_wrapper" name="diffbind" version="0.0.1">
  <requirements>
    <requirement type="set_environment">SOMEWRAPPER_R_SCRIPT_PATH</requirement>
    <requirement type="package" version="2.15.1">R</requirement>
  </requirements>
  <command interpreter="python"> 
    somewrapper.py Rscript \$SOMEWRAPPER_R_SCRIPT_PATH/somewrapper.r &gt; ${some_out}
  </command>
  <inputs>
    <param format="txt" name="input_file" type="data" label="some input" />
  </inputs>
  <outputs>
    <!--<data format="html" name="html_outfile" label="index" />-->
    <!--<data format="html" hidden="True" name="html_outfile" label="index.html" />-->
    <data format="txt" name="some_out" label="S{tool.name} on #echo os.path.splitext(str($input_file.name))[0]#.zip" />
  </outputs>
  <help>
  </help>
</tool>