Mercurial > repos > kevyin > sometool
annotate somewrapper.xml @ 0:959a0e30d6c1 draft default tip
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| author | kevyin |
|---|---|
| date | Sat, 19 Jan 2013 21:51:49 -0500 |
| parents | |
| children |
| rev | line source |
|---|---|
| 0 | 1 <tool id="some_wrapper" name="diffbind" version="0.0.1"> |
| 2 <requirements> | |
| 3 <requirement type="set_environment">SOMEWRAPPER_R_SCRIPT_PATH</requirement> | |
| 4 <requirement type="package" version="2.15.1">R</requirement> | |
| 5 </requirements> | |
| 6 <command interpreter="python"> | |
| 7 somewrapper.py Rscript \$SOMEWRAPPER_R_SCRIPT_PATH/somewrapper.r > ${some_out} | |
| 8 </command> | |
| 9 <inputs> | |
| 10 <param format="txt" name="input_file" type="data" label="some input" /> | |
| 11 </inputs> | |
| 12 <outputs> | |
| 13 <!--<data format="html" name="html_outfile" label="index" />--> | |
| 14 <!--<data format="html" hidden="True" name="html_outfile" label="index.html" />--> | |
| 15 <data format="txt" name="some_out" label="S{tool.name} on #echo os.path.splitext(str($input_file.name))[0]#.zip" /> | |
| 16 </outputs> | |
| 17 <help> | |
| 18 </help> | |
| 19 </tool> |