Mercurial > repos > kevyin > homer
changeset 0:ba0eda2caac1 draft
added
annoatePeaks
author | kevyin |
---|---|
date | Thu, 01 Nov 2012 00:20:26 -0400 |
parents | |
children | 5a179add5996 |
files | annotatePeaks.xml |
diffstat | 1 files changed, 37 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/annotatePeaks.xml Thu Nov 01 00:20:26 2012 -0400 @@ -0,0 +1,37 @@ +<tool id="homer-annotate-peaks" name="annotate-peaks" version="0.0.1"> + <requirements> + <requirement type="package">homer</requirement> + </requirements> + <description></description> + <!--<version_command></version_command>--> + <command interpreter="perl"> + annotatePeaks.pl $input_bed $genome > $out_annotated + 2>&1 || echo "Error running annotatePeaks." + </command> + <inputs> + <param format="bed" name="input_bed" type="data" label="Intervals in BED format" /> + </inputs> + <outputs> + <!--<data format="html" name="html_outfile" label="index" />--> + <!--<data format="html" hidden="True" name="html_outfile" label="index.html" />--> + <data format="csv" name="out_annotated" label="Annotated" /> + </outputs> + <tests> + <test> + <!--<param name="input_file" value="extract_genomic_dna.fa" />--> + <!--<output name="html_file" file="sample_output.html" ftype="html" />--> + </test> + </tests> + + <help> + + .. class:: infomark + + **Homer annoatePeaks** + More information on accepted formats + http://biowhat.ucsd.edu/homer/ngs/annotation.html + + + </help> +</tool> +